A pretty jupyter login

2025-11-17 14:22:19 +01:00
parent 30b7175702
commit 021e2a3919
26 changed files with 1057178 additions and 111 deletions
--- a/jupyterhub_volumes/course/data/Wolf_diet/R_stats.ipynb
+++ b/jupyterhub_volumes/course/data/Wolf_diet/R_stats.ipynb
--- a/jupyterhub_volumes/course/data/Wolf_diet/vert01_ref_db.fasta.gz
+++ b/jupyterhub_volumes/course/data/Wolf_diet/vert01_ref_db.fasta.gz
--- a/jupyterhub_volumes/course/data/Wolf_diet/wolf.ipynb
+++ b/jupyterhub_volumes/course/data/Wolf_diet/wolf.ipynb
--- a/jupyterhub_volumes/course/data/Wolf_diet/wolf.pdf
+++ b/jupyterhub_volumes/course/data/Wolf_diet/wolf.pdf
--- a/jupyterhub_volumes/course/data/Wolf_diet/wolf_F.fastq
+++ b/jupyterhub_volumes/course/data/Wolf_diet/wolf_F.fastq
--- a/jupyterhub_volumes/course/data/Wolf_diet/wolf_R.fastq
+++ b/jupyterhub_volumes/course/data/Wolf_diet/wolf_R.fastq
--- a/jupyterhub_volumes/course/data/Wolf_diet/wolf_data_wolf_diet_ngsfilter.csv
+++ b/jupyterhub_volumes/course/data/Wolf_diet/wolf_data_wolf_diet_ngsfilter.csv
@@ -0,0 +1,8 @@
+@param,matching,strict
+@param,primer_mismatches,2
+@param,indels,false
+experiment,sample,sample_tag,forward_primer,reverse_primer
+wolf_diet,13a_F730603,aattaac,TTAGATACCCCACTATGC,TAGAACAGGCTCCTCTAG
+wolf_diet,15a_F730814,gaagtag,TTAGATACCCCACTATGC,TAGAACAGGCTCCTCTAG
+wolf_diet,26a_F040644,gaatatc,TTAGATACCCCACTATGC,TAGAACAGGCTCCTCTAG
+wolf_diet,29a_F260619,gcctcct,TTAGATACCCCACTATGC,TAGAACAGGCTCCTCTAG
--- a/jupyterhub_volumes/course/data/ref_db_raw.fasta
+++ b/jupyterhub_volumes/course/data/ref_db_raw.fasta
--- a/jupyterhub_volumes/course/data/ref_db_raw.fasta.zip
+++ b/jupyterhub_volumes/course/data/ref_db_raw.fasta.zip
--- a/jupyterhub_volumes/web/obidoc/docs/cookbook/illumina/ncbitaxo.tgz
+++ b/jupyterhub_volumes/web/obidoc/docs/cookbook/illumina/ncbitaxo.tgz
--- a/jupyterhub_volumes/web/obidoc/docs/cookbook/illumina/results/wolf.fastq
+++ b/jupyterhub_volumes/web/obidoc/docs/cookbook/illumina/results/wolf.fastq
--- a/jupyterhub_volumes/web/obidoc/docs/cookbook/illumina/results/wolf_assembled.fastq
+++ b/jupyterhub_volumes/web/obidoc/docs/cookbook/illumina/results/wolf_assembled.fastq
--- a/jupyterhub_volumes/web/obidoc/docs/cookbook/illumina/results/wolf_assembled_assigned.fastq
+++ b/jupyterhub_volumes/web/obidoc/docs/cookbook/illumina/results/wolf_assembled_assigned.fastq
--- a/jupyterhub_volumes/web/obidoc/docs/cookbook/illumina/results/wolf_assembled_assigned_uniq.fasta
+++ b/jupyterhub_volumes/web/obidoc/docs/cookbook/illumina/results/wolf_assembled_assigned_uniq.fasta
--- a/jupyterhub_volumes/web/obidoc/docs/cookbook/illumina/wolf_data/wolf_F.fastq.gz
+++ b/jupyterhub_volumes/web/obidoc/docs/cookbook/illumina/wolf_data/wolf_F.fastq.gz
--- a/jupyterhub_volumes/web/obidoc/docs/cookbook/illumina/wolf_data/wolf_R.fastq.gz
+++ b/jupyterhub_volumes/web/obidoc/docs/cookbook/illumina/wolf_data/wolf_R.fastq.gz
--- a/jupyterhub_volumes/web/obidoc/docs/cookbook/illumina/wolf_diet_dataset.tgz
+++ b/jupyterhub_volumes/web/obidoc/docs/cookbook/illumina/wolf_diet_dataset.tgz
--- a/jupyterhub_volumes/web/obidoc/docs/principles/ncbitaxo.tgz
+++ b/jupyterhub_volumes/web/obidoc/docs/principles/ncbitaxo.tgz
--- a/jupyterhub_volumes/web/obidoc/images/welcome_obitools4.jpg
+++ b/jupyterhub_volumes/web/obidoc/images/welcome_obitools4.jpg
--- a/jupyterhub_volumes/web/obidoc/mermaid.min.js
+++ b/jupyterhub_volumes/web/obidoc/mermaid.min.js
--- a/jupyterhub_volumes/web/obidoc/obitools/obiannotate/ncbitaxo.tgz
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--- a/jupyterhub_volumes/web/obidoc/obitools/obigrep/ncbitaxo.tgz
+++ b/jupyterhub_volumes/web/obidoc/obitools/obigrep/ncbitaxo.tgz