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Eric Coissac
2025-11-16 14:56:03 +01:00
parent 35d275c104
commit 30b7175702
367 changed files with 170866 additions and 11173 deletions
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>AB061527 {"count":1,"definition":"Sorex unguiculatus mitochondrial NA, complete genome.","family_name":"Soricidae","family_taxid":9376,"genus_name":"Sorex","genus_taxid":9379,"obicleandb_level":"family","obicleandb_trusted":2.2137847111025621e-13,"species_name":"Sorex unguiculatus","species_taxid":62275,"taxid":62275}
ttagccctaaacttaggtatttaatctaacaaaaatacccgtcagagaactactagcaat
agcttaaaactcaaaggacttggcggtgctttatatccct
>AL355887 {"count":2,"definition":"Human chromosome 14 NA sequence BAC R-179O11 of library RPCI-11 from chromosome 14 of Homo sapiens (Human)XXKW HTG.; HTGS_ACTIVFIN.","family_name":"Hominidae","family_taxid":9604,"genus_name":"Homo","genus_taxid":9605,"obicleandb_level":"genus","obicleandb_trusted":0,"species_name":"Homo sapiens","species_taxid":9606,"taxid":9606}
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@HELIUM_000100422_612GNAAXX:7:108:5640:3823#0/1 {"ali_dir":"left","ali_length":62,"mode":"alignment","pairing_mismatches":{"(T:26)->(G:13)":62,"(T:34)->(G:18)":48},"score":484,"score_norm":0.968,"seq_a_single":46,"seq_ab_match":60,"seq_b_single":46}
ccgcctcctttagataccccactatgcttagccctaaacacaagtaattaatataacaaaattgttcgccagagtactaccggcaatagcttaaaactcaaaggacttggcggtgctttatacccttctagaggagcctgttctaaggaggcgg
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CCCCCCCBCCCCCCCCCCCCCCCCCCCCCCBCCCCCBCCCCCCC<CcCccbe[`F`accXV<TA\RYU\\ee_e[XZ[XEEEEEEEEEE?EEEEEEEEEEDEEEEEEECCCCCCCCCCCCCCCCCCCCCCCACCCCCACCCCCCCCCCCCCCCC
@HELIUM_000100422_612GNAAXX:7:97:14311:19299#0/1 {"ali_dir":"left","ali_length":62,"mode":"alignment","pairing_mismatches":{"(A:02)->(G:30)":104,"(A:34)->(G:14)":64,"(C:02)->(A:30)":86,"(C:02)->(T:20)":108,"(C:27)->(G:32)":83,"(C:34)->(G:18)":57,"(T:02)->(G:26)":87,"(T:22)->(G:14)":66,"(T:29)->(G:11)":62,"(T:32)->(G:30)":48},"score":283,"score_norm":0.839,"seq_a_single":46,"seq_ab_match":52,"seq_b_single":46}
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taxid,parent,taxonomic_rank,scientific_name
taxon:1 [root]@no rank,taxon:1 [root]@no rank,no rank,root
taxon:131567 [cellular organisms]@no rank,taxon:1 [root]@no rank,no rank,cellular organisms
taxon:2759 [Eukaryota]@superkingdom,taxon:131567 [cellular organisms]@no rank,superkingdom,Eukaryota
taxon:33090 [Viridiplantae]@kingdom,taxon:2759 [Eukaryota]@superkingdom,kingdom,Viridiplantae
taxon:35493 [Streptophyta]@phylum,taxon:33090 [Viridiplantae]@kingdom,phylum,Streptophyta
taxon:131221 [Streptophytina]@subphylum,taxon:35493 [Streptophyta]@phylum,subphylum,Streptophytina
taxon:3193 [Embryophyta]@clade,taxon:131221 [Streptophytina]@subphylum,clade,Embryophyta
taxon:58023 [Tracheophyta]@clade,taxon:3193 [Embryophyta]@clade,clade,Tracheophyta
taxon:78536 [Euphyllophyta]@clade,taxon:58023 [Tracheophyta]@clade,clade,Euphyllophyta
taxon:58024 [Spermatophyta]@clade,taxon:78536 [Euphyllophyta]@clade,clade,Spermatophyta
taxon:3398 [Magnoliopsida]@class,taxon:58024 [Spermatophyta]@clade,class,Magnoliopsida
taxon:1437183 [Mesangiospermae]@clade,taxon:3398 [Magnoliopsida]@class,clade,Mesangiospermae
taxon:71240 [eudicotyledons]@clade,taxon:1437183 [Mesangiospermae]@clade,clade,eudicotyledons
taxon:91827 [Gunneridae]@clade,taxon:71240 [eudicotyledons]@clade,clade,Gunneridae
taxon:1437201 [Pentapetalae]@clade,taxon:91827 [Gunneridae]@clade,clade,Pentapetalae
taxon:71275 [rosids]@clade,taxon:1437201 [Pentapetalae]@clade,clade,rosids
taxon:91835 [fabids]@clade,taxon:71275 [rosids]@clade,clade,fabids
taxon:3502 [Fagales]@order,taxon:91835 [fabids]@clade,order,Fagales
taxon:3514 [Betulaceae]@family,taxon:3502 [Fagales]@order,family,Betulaceae
taxon:3504 [Betula]@genus,taxon:3514 [Betulaceae]@family,genus,Betula
taxon:1685988 [Betula murrayana]@species,taxon:3504 [Betula]@genus,species,Betula murrayana
taxon:361422 [Betula ovalifolia]@species,taxon:3504 [Betula]@genus,species,Betula ovalifolia
taxon:1685972 [Betula x caerulea]@species,taxon:3504 [Betula]@genus,species,Betula x caerulea
taxon:216986 [Betula schmidtii]@species,taxon:3504 [Betula]@genus,species,Betula schmidtii
taxon:312791 [Betula michauxii]@species,taxon:3504 [Betula]@genus,species,Betula michauxii
taxon:3015411 [Betula pamirica]@species,taxon:3504 [Betula]@genus,species,Betula pamirica
taxon:312792 [Betula raddeana]@species,taxon:3504 [Betula]@genus,species,Betula raddeana
taxon:216991 [Betula humilis]@species,taxon:3504 [Betula]@genus,species,Betula humilis
taxon:2218489 [Betula ovalifolia x Betula ermanii]@species,taxon:3504 [Betula]@genus,species,Betula ovalifolia x Betula ermanii
1 taxid parent taxonomic_rank scientific_name
2 taxon:1 [root]@no rank taxon:1 [root]@no rank no rank root
3 taxon:131567 [cellular organisms]@no rank taxon:1 [root]@no rank no rank cellular organisms
4 taxon:2759 [Eukaryota]@superkingdom taxon:131567 [cellular organisms]@no rank superkingdom Eukaryota
5 taxon:33090 [Viridiplantae]@kingdom taxon:2759 [Eukaryota]@superkingdom kingdom Viridiplantae
6 taxon:35493 [Streptophyta]@phylum taxon:33090 [Viridiplantae]@kingdom phylum Streptophyta
7 taxon:131221 [Streptophytina]@subphylum taxon:35493 [Streptophyta]@phylum subphylum Streptophytina
8 taxon:3193 [Embryophyta]@clade taxon:131221 [Streptophytina]@subphylum clade Embryophyta
9 taxon:58023 [Tracheophyta]@clade taxon:3193 [Embryophyta]@clade clade Tracheophyta
10 taxon:78536 [Euphyllophyta]@clade taxon:58023 [Tracheophyta]@clade clade Euphyllophyta
11 taxon:58024 [Spermatophyta]@clade taxon:78536 [Euphyllophyta]@clade clade Spermatophyta
12 taxon:3398 [Magnoliopsida]@class taxon:58024 [Spermatophyta]@clade class Magnoliopsida
13 taxon:1437183 [Mesangiospermae]@clade taxon:3398 [Magnoliopsida]@class clade Mesangiospermae
14 taxon:71240 [eudicotyledons]@clade taxon:1437183 [Mesangiospermae]@clade clade eudicotyledons
15 taxon:91827 [Gunneridae]@clade taxon:71240 [eudicotyledons]@clade clade Gunneridae
16 taxon:1437201 [Pentapetalae]@clade taxon:91827 [Gunneridae]@clade clade Pentapetalae
17 taxon:71275 [rosids]@clade taxon:1437201 [Pentapetalae]@clade clade rosids
18 taxon:91835 [fabids]@clade taxon:71275 [rosids]@clade clade fabids
19 taxon:3502 [Fagales]@order taxon:91835 [fabids]@clade order Fagales
20 taxon:3514 [Betulaceae]@family taxon:3502 [Fagales]@order family Betulaceae
21 taxon:3504 [Betula]@genus taxon:3514 [Betulaceae]@family genus Betula
22 taxon:1685988 [Betula murrayana]@species taxon:3504 [Betula]@genus species Betula murrayana
23 taxon:361422 [Betula ovalifolia]@species taxon:3504 [Betula]@genus species Betula ovalifolia
24 taxon:1685972 [Betula x caerulea]@species taxon:3504 [Betula]@genus species Betula x caerulea
25 taxon:216986 [Betula schmidtii]@species taxon:3504 [Betula]@genus species Betula schmidtii
26 taxon:312791 [Betula michauxii]@species taxon:3504 [Betula]@genus species Betula michauxii
27 taxon:3015411 [Betula pamirica]@species taxon:3504 [Betula]@genus species Betula pamirica
28 taxon:312792 [Betula raddeana]@species taxon:3504 [Betula]@genus species Betula raddeana
29 taxon:216991 [Betula humilis]@species taxon:3504 [Betula]@genus species Betula humilis
30 taxon:2218489 [Betula ovalifolia x Betula ermanii]@species taxon:3504 [Betula]@genus species Betula ovalifolia x Betula ermanii

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