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This commit is contained in:
Eric Coissac
2025-11-16 14:56:03 +01:00
parent 35d275c104
commit 30b7175702
367 changed files with 170866 additions and 11173 deletions
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16
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@M01334:147:000000000-LBRVD:1:1101:14968:1570 1:N:0:CTCACCAA+CTAGGCAA
TGTTCCACGGGCAATCCTGAGCCAAATCTTTCATTTTGAAAAAATGAGAGATATAATGTATCTCTTATTTATTATAAGAAATAAAATATTTCTTATCTAATATTAAAGTTAGGTGCAGAGACTCAATGGGTGGAACTAGATCGGATGTGCA
+
11>A>@3@A11>ACFFEG110BFB00BAFGHE2DFGG201110/B11111/D1D2222D2FDFDFGDGHHBGG2F222110D11@1D1FGHFHGFF@GE1F2FG22112B220F1@111/0>BF11B210B>//11B1<1BB<///<1122
@M01334:147:000000000-LBRVD:1:1101:15946:1586 1:N:0:CTCACCAA+CTAGGCAA
TCCTAACCCCATTGAGTCTCTGCACCTATCTTTAATATTAGATAAGAAATATTTTATTTCTTATAATAAATAAGAGATATTTTATATCTCTCATTTTTTCAAAATGAAAGATTTGGCTCAGGATTGCCCACGTAACGGAGATCGGAAGAGC
+
1>>A111>>>AFGGB1FFGFGFF3BBF1GGHHH33D2GH2B1D211110D1DGHHBFGGGGG2FA2F221F21A1F0D1DGHH2FAFFGFHFFGHHHHGG22@1BD111@0FFHE11GC1001BGF1B1B/EF00??////BF////<000
@M01334:147:000000000-LBRVD:1:1101:15399:1590 1:N:0:CTCACCAA+CTAGGCAA
TGTTCCACCCATTGAGTCTCTGCACCTATCTTTAATATTAGATAAGAAATATTTTACTTCTTATAATAAATAAGAGTTATTTTATATCTCTCATTTTTTCAAAATGAAAGATTTGGCTCAGGATTGCCCGTGGAACTAGATCGGAAGAGCA
+
11>A>@3B>>1CF111BBFAG3A3AAF1FFGHHF3FBGH221F211110D1DGHH2BBGBFF2F22D221D211111A2DDGG2F2FFFEGD1FFHHHGFD221B111110BFGD11F@1001BF0@@1/EA//1>F1B1FD/////00<1
@M01334:147:000000000-LBRVD:1:1101:13773:1687 1:N:0:CTCACCAA+CTAGGCAA
CTCGGATCACCATTGAGTCTCTGCACCTATCTTTAATATTAGATAAGAAAAAATATTATTTCTTATCTGAAATAAGAAATATTTTATATATTTCTTTTTCTCAAAATGAAAGATTTGGCTCAGGATTGCCCTGATCCGAGGGATAGCACCA
+
3AAAAAADFFFFGGGGFGGGGGHHHHHHFHHHHHHHHGHHHHGHGGHFFHHHCGFHHHHHHHHHHHHHGHHGGFHFFHHHGHHHHBHHHGHHHHHHHHHHHHHFFHHFBDFBCGHHF4BGHFGFFHHBDGFHHEHHFAAEECEGF3FDGFC

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jupyterhub_volumes/web/obidoc/docs/principles/four_sequences.fasta Normal file
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>AY189646 {"count":1,"definition":"Homo sapiens clone arCan119 12S ribosomal RNA gene, partial sequence; mitochondrial gene for mitochondrial product.","species_name":"Homo sapiens","taxid":"taxon:9606 [Homo sapiens]@species"}
ttagccctaaacctcaacagttaaatcaacaaaactgctcgccagaacactacgrgccac
agcttaaaactcaaaggacctggcggtgcttcatatccct
>AF023201 {"count":1,"definition":"Snyderichthys copei 12S ribosomal RNA gene, mitochondrial gene for mitochondrial RNA, complete sequence.","species_name":"Snyderichthys copei","taxid":"67561"}
tcagccataaacctagatgtccagctacagttagacatccgcccgggtactacgagcatt
agcttgaaacccaaaggacctgacggtgccttagaccccc
>JN897380 {"count":1,"definition":"Nihonotrypaea thermophila mitochondrion, complete genome.","species_name":"Nihonotrypaea thermophila","taxid":"1114968"}
tagccttaacaaacatactaaaatattaaaagttatggtctctaaatttaaaggatttgg
cggtaatttagtccag
>KC236422 {"count":1,"definition":"Nihonotrypaea japonica mitochondrion, complete genome.","species_name":"Nihonotrypaea japonica","taxid":"5799994"}
cagctttaacaaacatactaaaatattaaaagttatggtctctaaatttaaaggatttgg
cggtaatttagtccag

2111
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jupyterhub_volumes/web/obidoc/docs/principles/index.xml Normal file
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<?xml version="1.0" encoding="utf-8" standalone="yes"?>
<rss version="2.0" xmlns:atom="http://www.w3.org/2005/Atom">
<channel>
<title>General operating principles on OBITools4 documentation</title>
<link>http://metabar:8888/obidoc/docs/principles/</link>
<description>Recent content in General operating principles on OBITools4 documentation</description>
<generator>Hugo</generator>
<language>en-us</language>
<atom:link href="http://metabar:8888/obidoc/docs/principles/index.xml" rel="self" type="application/rss+xml" />
</channel>
</rss>

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jupyterhub_volumes/web/obidoc/docs/principles/result_R1.fasta Normal file
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>M01334:147:000000000-LBRVD:1:1101:14968:1570 {"definition":"1:N:0:CTCACCAA+CTAGGCAA"}
tgttccacgggcaatcctgagccaaatctttcattttgaaaaaatgagagatataatgta
tctcttatttattataagaaataaaatatttcttatctaatattaaagttaggtgcagag
actcaatgggtggaactagatcggatgtgca
>M01334:147:000000000-LBRVD:1:1101:15946:1586 {"definition":"1:N:0:CTCACCAA+CTAGGCAA"}
tcctaaccccattgagtctctgcacctatctttaatattagataagaaatattttatttc
ttataataaataagagatattttatatctctcattttttcaaaatgaaagatttggctca
ggattgcccacgtaacggagatcggaagagc
>M01334:147:000000000-LBRVD:1:1101:15399:1590 {"definition":"1:N:0:CTCACCAA+CTAGGCAA"}
tgttccacccattgagtctctgcacctatctttaatattagataagaaatattttacttc
ttataataaataagagttattttatatctctcattttttcaaaatgaaagatttggctca
ggattgcccgtggaactagatcggaagagca
>M01334:147:000000000-LBRVD:1:1101:13773:1687 {"definition":"1:N:0:CTCACCAA+CTAGGCAA"}
ctcggatcaccattgagtctctgcacctatctttaatattagataagaaaaaatattatt
tcttatctgaaataagaaatattttatatatttctttttctcaaaatgaaagatttggct
caggattgccctgatccgagggatagcacca

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jupyterhub_volumes/web/obidoc/docs/principles/result_R2.fasta Normal file
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>M01334:147:000000000-LBRVD:1:1101:14968:1570 {"definition":"2:N:0:CTCACCAA+CTAGGCAA"}
ttttcctccctttttttctctgcacctttcttttttattagttttttattattttttttc
tttttttattttattgatactttatatctctctttttttcttttttattgatttttctct
ggttttcccttgttacttgttcttttttgct
>M01334:147:000000000-LBRVD:1:1101:15946:1586 {"definition":"2:N:0:CTCACCAA+CTAGGCAA"}
ccgttacgtgggcaatcctgagccaattctttctttttgaaaaaatgagagatataaaat
atctcttatttattataagaaataaaatatttcttatctaatattaatgataggtgcagt
gactctatggggttaggtagttcggatgagc
>M01334:147:000000000-LBRVD:1:1101:15399:1590 {"definition":"2:N:0:CTCACCAA+CTAGGCAA"}
ttttcctcgggctatcctgagccaaatctttccttttgaaaaatttagagatataaaata
tctcttatttattttatgtagtattatatttcttatctaatattaaatttagttgctttt
tctcattttgttttactttttcttttttgct
>M01334:147:000000000-LBRVD:1:1101:13773:1687 {"definition":"2:N:0:CTCACCAA+CTAGGCAA"}
tgatagcagggctatcctgagccaaatccgtgttttgagaaaacaagggggttctcgaac
tagaatacaaaagaaaaggataggtgcagagactcaatggtgctatccctcggatcaggg
caatccttagccaaatctttcattttttgaa

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@M01334:147:000000000-LBRVD:1:1101:14968:1570 2:N:0:CTCACCAA+CTAGGCAA
TTTTCCTCCCTTTTTTTCTCTGCACCTTTCTTTTTTATTAGTTTTTTATTATTTTTTTTCTTTTTTTATTTTATTGATACTTTATATCTCTCTTTTTTTCTTTTTTATTGATTTTTCTCTGGTTTTCCCTTGTTACTTGTTCTTTTTTGCT
+
11>>1131111BB111A0B3B313A0B1BAFGG11E/DG222B22///1D2DDGG1AE>>FG1D1/>/12B221212@21BFD2B2B2B2F11BFGHEEC1111B//1212BBF110@22111@@/2111?01111@111?111111--11
@M01334:147:000000000-LBRVD:1:1101:15946:1586 2:N:0:CTCACCAA+CTAGGCAA
CCGTTACGTGGGCAATCCTGAGCCAATTCTTTCTTTTTGAAAAAATGAGAGATATAAAATATCTCTTATTTATTATAAGAAATAAAATATTTCTTATCTAATATTAATGATAGGTGCAGTGACTCTATGGGGTTAGGTAGTTCGGATGAGC
+
111>>111B111111BA0B1101B001BAGGH22DGGH?01110/B11111/D1D2221D1DBEDGH1GHH2GG2F222110D@111D1DFGEGFBG@GB1B2FG22222B220B11111111B@11B210/?E/00B211B2/////111
@M01334:147:000000000-LBRVD:1:1101:15399:1590 2:N:0:CTCACCAA+CTAGGCAA
TTTTCCTCGGGCTATCCTGAGCCAAATCTTTCCTTTTGAAAAATTTAGAGATATAAAATATCTCTTATTTATTTTATGTAGTATTATATTTCTTATCTAATATTAAATTTAGTTGCTTTTTCTCATTTTGTTTTACTTTTTCTTTTTTGCT
+
11>>1131111111B11B1101A000B1DFF21DDFG1011100B122111D1D2221D1DADAFG1DGH2FG2D212222D2222D2DAF2FG2D@F21B2DE22122B221@11111110B222B222B00021B221B011111//11
@M01334:147:000000000-LBRVD:1:1101:13773:1687 2:N:0:CTCACCAA+CTAGGCAA
TGATAGCAGGGCTATCCTGAGCCAAATCCGTGTTTTGAGAAAACAAGGGGGTTCTCGAACTAGAATACAAAAGAAAAGGATAGGTGCAGAGACTCAATGGTGCTATCCCTCGGATCAGGGCAATCCTTAGCCAAATCTTTCATTTTTTGAA
+
111>13@1111>11B1AF11BABC00B110BAFGGH0000DFAB//0///EEECGFA10AG1111D@@11100/0000/0F110B11@11/0>FC@1B>1B11FEFEC>E>///?<0110/?/FF<G22111@00@<GHHB>FHHH1///1

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>AB061527 {"count":1,"definition":"Sorex unguiculatus mitochondrial NA, complete genome.","family_name":"Soricidae","family_taxid":9376,"genus_name":"Sorex","genus_taxid":9379,"obicleandb_level":"family","obicleandb_trusted":2.2137847111025621e-13,"species_name":"Sorex unguiculatus","species_taxid":62275,"taxid":62275}
ttagccctaaacttaggtatttaatctaacaaaaatacccgtcagagaactactagcaat
agcttaaaactcaaaggacttggcggtgctttatatccct
>AL355887 {"count":2,"definition":"Human chromosome 14 NA sequence BAC R-179O11 of library RPCI-11 from chromosome 14 of Homo sapiens (Human)XXKW HTG.; HTGS_ACTIVFIN.","family_name":"Hominidae","family_taxid":9604,"genus_name":"Homo","genus_taxid":9605,"obicleandb_level":"genus","obicleandb_trusted":0,"species_name":"Homo sapiens","species_taxid":9606,"taxid":9606}
ttagccctaaactctagtagttacattaacaaaaccattcgtcagaatactacgagcaac
agcttaaaactcaaaggacctggcagttctttatatccct

6
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>AB061527 {"count":1,"definition":"Sorex unguiculatus mitochondrial NA, complete genome.","family_name":"Soricidae","family_taxid":"9376","genus_name":"Sorex","genus_taxid":"9379","obicleandb_level":"family","obicleandb_trusted":2.2137847111025621e-13,"species_name":"Sorex unguiculatus","species_taxid":"62275","taxid":"62275"}
agggatataaagcaccgccaagtcctttgagttttaagctattgctagtagttctctgac
gggtatttttgttagattaaatacctaagtttagggctaa
>AL355887 {"count":2,"definition":"Human chromosome 14 NA sequence BAC R-179O11 of library RPCI-11 from chromosome 14 of Homo sapiens (Human)XXKW HTG.; HTGS_ACTIVFIN.","family_name":"Hominidae","family_taxid":"9604","genus_name":"Homo","genus_taxid":"9605","obicleandb_level":"genus","obicleandb_trusted":0,"species_name":"Homo sapiens","species_taxid":"9606","taxid":"9606"}
agggatataaagaactgccaggtcctttgagttttaagctgttgctcgtagtattctgac
gaatggttttgttaatgtaactactagagtttagggctaa