Make cleaning

2025-11-16 14:56:03 +01:00
parent 35d275c104
commit 30b7175702
367 changed files with 170866 additions and 11173 deletions
--- a/jupyterhub_volumes/web/obidoc/examples/obipairing/forward.fastq
+++ b/jupyterhub_volumes/web/obidoc/examples/obipairing/forward.fastq
@@ -0,0 +1,16 @@
+@LH00534:26:2237MWLT1:2:1101:3663:1096 1:N:0:AAGATACT+ATGTAAGT
+TCCAGGGCAATCCTGAGCCAAATCTTCTTTTTGAGAAAAAGAAATATATAAAATATTTCTTATTTCAGATAAGAAATAATATTTTTTCTTATCTAATATTAAAGATAGGTGCAGAGACTCAATGGTGGATTGCAGATCGGAAGAGCACACG
+
+IIIII9IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII9IIIIIIIII9IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII9IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII
+@LH00534:26:2237MWLT1:2:1101:4643:1096 1:N:0:AAGATACT+ATGTAAGT
+ATAACGCTCCCCTTGAGTCTCTGCACCTATCCTTTTTGATTCTAGTTTTTATAGAGAAACACATTTTCTCCAGATTCAGATTTGGCTCAGGATTGCCCGAGCGTTATAGATCGGAAGAGCACACGTCTGAACTCCAGTCACCAGATACTAT
+
+IIIII-I9III-9IIII9IIIIII9IIIIIIIIIIIIIIIIIII-99-III-IIII9IIII99-9I99I999I-9I-IIIIII-9I9I9I9IIIIIII99I9I99II9-III99III9IIIII9IIIII9IIIIIIIII9I-IIII9IIII
+@LH00534:26:2237MWLT1:2:1101:5327:1096 1:N:0:AAGATACT+ATGTAAGT
+GCTTGTGACCCATTGAGTCTCTGCACCTATCCTTTTCCTTTGTATTCTAGTTCGAGAACCCCCTTGTTTTCTCAAAACACGGATTTGGCTCAGGATTGCCCTTGGATGGTAGATCGGAAGAGCACACGTCTGAACTCCAGTCACAAGATAC
+
+IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII
+@LH00534:26:2237MWLT1:2:1101:5512:1096 1:N:0:AAGATACT+ATGTAAGT
+CAACCCAGGGGCAATCCTGAGCCAAATCCGTGTTTTGAGAAAACAAGGGGGTTCTCGAACTAGAATACAAAGGAAAAGGATAGGTGCAGAGACTCAATGGCTTGGTTGAGATCGGAAGAGCACACGTCTGAACTCCAGTCACAAGATACTA
+
+IIIII--III9II9IIIIII-IIII9IIIIIIIIIIIIIIIII-I9IIIIIIII9IIIIIII9II9IIIII99II-IIIIII-9II9IIII-9I-II9III9I9II99I9I-9-I999-I99III99I9I-III9IIIIIIIIII9IIIII
--- a/jupyterhub_volumes/web/obidoc/examples/obipairing/paired.fastq
+++ b/jupyterhub_volumes/web/obidoc/examples/obipairing/paired.fastq
@@ -0,0 +1,16 @@
+@LH00534:26:2237MWLT1:2:1101:3663:1096 {"ali_dir":"right","ali_length":133,"definition":"1:N:0:AAGATACT+ATGTAAGT","mode":"alignment","paring_fast_count":130,"paring_fast_overlap":133,"paring_fast_score":1,"score":1860,"score_norm":1,"seq_a_single":18,"seq_ab_match":133,"seq_b_single":18}
+acgacgctcttccgatcttccagggcaatcctgagccaaatcttctttttgagaaaaagaaatatataaaatatttcttatttcagataagaaataatattttttcttatctaatattaaagataggtgcagagactcaatggtggattgcagatcggaagagcacacg
+
+II9IIIIIIII9IIIII9qqqqqaqqqqqqqqqqqqqqqqqqaqqqaqqqqqqqqqqqqqqqqqqqqqqaqqqUqqqqqaqqqqqqqqqqqqqqqqqqqqUqaqqqaqqqqqqqqqqqqqqqqqqqqqqqaqqqqqqqqqqqqqqqqqqaaIIIIIIIIIIIIIIIIII
+@LH00534:26:2237MWLT1:2:1101:4643:1096 {"ali_dir":"right","ali_length":107,"definition":"1:N:0:AAGATACT+ATGTAAGT","mode":"alignment","pairing_mismatches":{"(C:12)->(A:40)":121},"paring_fast_count":96,"paring_fast_overlap":107,"paring_fast_score":0.923,"score":1409,"score_norm":0.981,"seq_a_single":44,"seq_ab_match":105,"seq_b_single":44}
+aacatttacatacgctttttccctacacgacgctcttccgatctataacgctcccattgagtctctgcacctatcctttttgattctagtttttatagagaaacacattttctccagattaagatttggctcaggattgcccgagcgttatagatcggaagagcacacgtctgaactccagtcaccagatactat
+
+--9--I-I-9999-99-9I9I9-9-IIIII9I-IIIIIII9IIIqaUaqUqaqqqJaqqqqaaqqqqqaqqqqqqaqqqaqqUqqUqqUaaUqqqUqqqqaqqUqaQUaqaQqaaaqUaqJaqqUqaUaqEaaqaqaqaqqqaaqEqQQqU9-III99III9IIIII9IIIII9IIIIIIIII9I-IIII9IIII
+@LH00534:26:2237MWLT1:2:1101:5327:1096 {"ali_dir":"right","ali_length":110,"definition":"1:N:0:AAGATACT+ATGTAAGT","mode":"alignment","paring_fast_count":107,"paring_fast_overlap":110,"paring_fast_score":1,"score":1540,"score_norm":1,"seq_a_single":41,"seq_ab_match":110,"seq_b_single":41}
+acttacatacactctttccctacacgacgctcttccgatctgcttgtgacccattgagtctctgcacctatccttttcctttgtattctagttcgagaacccccttgttttctcaaaacacggatttggctcaggattgcccttggatggtagatcggaagagcacacgtctgaactccagtcacaagatac
+
+III-II-9III9IIIIIIIIIIIIIIIIIIIIIIIIIIIIIqqqqqqqqqqqqqqqqqqqqqqqqqqqqqqqqqqqqqqqqqqqqqqqqqqqqqqqqqqqqqqqqqqqqqqqqqqqqqqqqqqqqqqqqqqqqqqqqqqqqqqqqqqqqqqIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII
+@LH00534:26:2237MWLT1:2:1101:5512:1096 {"ali_dir":"right","ali_length":108,"definition":"1:N:0:AAGATACT+ATGTAAGT","mode":"alignment","pairing_mismatches":{"(C:12)->(A:40)":49,"(T:40)->(G:12)":104},"paring_fast_count":97,"paring_fast_overlap":108,"paring_fast_score":0.924,"score":1430,"score_norm":0.981,"seq_a_single":43,"seq_ab_match":106,"seq_b_single":43}
+acacttacatacactctttccctacacgacgctcttccgatctcaaccaaggggcaatcctgagccaaatccgtgttttgagaaaacaagggggttctcgaactagaatacaaaggaaaaggataggtgcagagactcaatggcttggttgagatcggaagagcacacgtctgaactccagtcacaagatacta
+
+I9--III99IIIIII-IIIIII9IIIIIIIIIIIIIIIIIIIIqqqqqJUUqqaqqaqqqqqqUqqaqQqqqqqqqaqqqqqqaqqEqaaqqqqqqqaqqqqqJqaqqaqqqqqaaqqUaqqqqqUaqqaqqqqUaqUqqaqqqaqaqqQaI9I-9-I999-I99III99I9I-III9IIIIIIIIII9IIIII
--- a/jupyterhub_volumes/web/obidoc/examples/obipairing/reverse.fastq
+++ b/jupyterhub_volumes/web/obidoc/examples/obipairing/reverse.fastq
@@ -0,0 +1,16 @@
+@LH00534:26:2237MWLT1:2:1101:3663:1096 2:N:0:AAGATACT+ATGTAAGT
+GCAATCCACCATTGAGTCTCTGCACCTATCTTTAATATTAGATAAGAAAAAATATTATTTCTTATCTGAAATAAGAAATATTTTATATATTTCTTTTTCTCAAAAAGAAGATTTGGCTCAGGATTGCCCTGGAAGATCGGAAGAGCGTCGT
+
+99IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII9III9I-IIIIIIIIIIIIIIIIIIIIIIIIII-IIIIIIIIIIIIIIIIIIIIIIIIII9III9IIIIIIIIIIIIIIIIIIIIIIII9IIIII9IIIIIIII9II
+@LH00534:26:2237MWLT1:2:1101:4643:1096 2:N:0:AAGATACT+ATGTAAGT
+ATAACGCTCGGGCAATCCTGAGCCAAATCTTAATCTGGAGAAAATGTGTTTCTCTATAAAAACTAGAATCAAAAAGGATAGGTGCAGAGACTCAATGGGAGCGTTATAGATCGGAAGAGCGTCGTGTAGGGAAAAAGCGTATGTAAATGTT
+
+-I99I-IIIIII9I9IIII9-III9I-II9IIIIIIIII9IIII9II-IIIIIIIIIIIIIIIII-II-II9III9IIIIIIIIIIII9IIIIIIIIIIIIII9-9IIII9IIIIIII-I9IIIII-9-9I9I9-99-9999-I-I--9--
+@LH00534:26:2237MWLT1:2:1101:5327:1096 2:N:0:AAGATACT+ATGTAAGT
+ACCATCCAAGGGCAATCCTGAGCCAAATCCGTGTTTTGAGAAAACAAGGGGGTTCTCGAACTAGAATACAAAGGAAAAGGATAGGTGCAGAGACTCAATGGGTCACAAGCAGATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTATGTAAGT
+
+IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII9III9-II-III
+@LH00534:26:2237MWLT1:2:1101:5512:1096 2:N:0:AAGATACT+ATGTAAGT
+CAACCAAGCCATTGAGTCTCTGCACCTATCCTTTTCCTTTGTATTCTCGTTCGAGAACCCCCTTGTTTTCTCAAAACACGGATTTGGCTCAGGATTGCCCCTTGGTTGAGATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTATGTAAGTGT
+
+I9IIIIIIIIIIIIIIIIIIIIIIIIIIIII9IIIIIIIIIIIIIII-IIIIIIIIIIIII9II9II9IIIIII9IIIIIII9I9IIIIIIIIIIIIIII-IIIIIIIIIIIIIIIIIIIIIIIIIII9IIIIII-IIIIII99III--9I