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Eric Coissac
2025-11-16 14:56:03 +01:00
parent 35d275c104
commit 30b7175702
367 changed files with 170866 additions and 11173 deletions
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>AB061527 {"count":1,"definition":"Sorex unguiculatus mitochondrial NA, complete genome.","family_name":"Soricidae","family_taxid":9376,"genus_name":"Sorex","genus_taxid":9379,"obicleandb_level":"family","obicleandb_trusted":2.2137847111025621e-13,"species_name":"Sorex unguiculatus","species_taxid":62275,"taxid":62275}
ttagccctaaacttaggtatttaatctaacaaaaatacccgtcagagaactactagcaat
agcttaaaactcaaaggacttggcggtgctttatatccct
>AL355887 {"count":2,"definition":"Human chromosome 14 NA sequence BAC R-179O11 of library RPCI-11 from chromosome 14 of Homo sapiens (Human)XXKW HTG.; HTGS_ACTIVFIN.","family_name":"Hominidae","family_taxid":9604,"genus_name":"Homo","genus_taxid":9605,"obicleandb_level":"genus","obicleandb_trusted":0,"species_name":"Homo sapiens","species_taxid":9606,"taxid":9606}
ttagccctaaactctagtagttacattaacaaaaccattcgtcagaatactacgagcaac
agcttaaaactcaaaggacctggcagttctttatatccct

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ID HQ324066; SV 1; linear; genomic DNA; STD; PLN; 84 BP.
XX
AC HQ324066;
XX
DT 30-MAR-2011 (Rel. 108, Created)
DT 20-NOV-2011 (Rel. 110, Last updated, Version 2)
XX
DE Trinia glauca tRNA-Leu (trnL) gene, intron; chloroplast.
XX
KW .
XX
OS Trinia glauca
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC asterids; campanulids; Apiales; Apiaceae; Apioideae; apioid superclade;
OC Selineae; Trinia.
OG Plastid:Chloroplast
XX
RN [1]
RP 1-84
RA Raye G., Miquel C., Coissac E., Redjadj C., Loison A., Taberlet P.;
RT "New insights on diet variability revealed by DNA barcoding and
RT high-throughput pyrosequencing: chamois diet in autumn as a case study";
RL Ecol. Res. 26(2):265-276(2011).
XX
RN [2]
RP 1-84
RA Raye G.;
RT ;
RL Submitted (25-SEP-2010) to the INSDC.
RL LECA, Universite Joseph Fourier, Bp 53, 2233 rue de la Piscine, Grenoble
RL 38041, France
XX
DR MD5; f2c1ac0a050529656590007b565d327d.
XX
FH Key Location/Qualifiers
FH
FT source 1..84
FT /organism="Trinia glauca"
FT /organelle="plastid:chloroplast"
FT /mol_type="genomic DNA"
FT /country="France"
FT /db_xref="taxon:1000432"
FT gene <1..>84
FT /gene="trnL"
FT /note="tRNA-Leu; tRNA-Leu(UAA)"
FT intron <1..>84
FT /gene="trnL"
FT /note="P6 loop"
XX
SQ Sequence 84 BP; 35 A; 16 C; 20 G; 13 T; 0 other;
gggcaatcct gagccaaatc ctattttaca aaaacaaaca aaggcccaga aggtgaaaaa 60
aggataggtg cagagactca atgg 84
//

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>HQ324066 {"definition":"Trinia glauca tRNA-Leu (trnL) gene, intron; chloroplast.","scientific_name":"Trinia glauca","taxid":1000432}
gggcaatcctgagccaaatcctattttacaaaaacaaacaaaggcccagaaggtgaaaaa
aggataggtgcagagactcaatgg

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>AB061527 obicleandb_level=family; count=1; family_name=Soricidae; genus_name=Sorex; genus_taxid=9379; obicleandb_trusted=2.2137847111025621e-13; species_name=Sorex unguiculatus; species_taxid=62275; taxid=62275; family_taxid=9376; Sorex unguiculatus mitochondrial NA, complete genome.
ttagccctaaacttaggtatttaatctaacaaaaatacccgtcagagaactactagcaat
agcttaaaactcaaaggacttggcggtgctttatatccct
>AL355887 species_name=Homo sapiens; family_taxid=9604; genus_name=Homo; obicleandb_trusted=0; genus_taxid=9605; obicleandb_level=genus; species_taxid=9606; taxid=9606; count=2; family_name=Hominidae; Human chromosome 14 NA sequence BAC R-179O11 of library RPCI-11 from chromosome 14 of Homo sapiens (Human)XXKW HTG.; HTGS_ACTIVFIN.
ttagccctaaactctagtagttacattaacaaaaccattcgtcagaatactacgagcaac
agcttaaaactcaaaggacctggcagttctttatatccct

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>AB061527 {"count":1,"definition":"Sorex unguiculatus mitochondrial NA, complete genome.","family_name":"Soricidae","family_taxid":9376,"genus_name":"Sorex","genus_taxid":9379,"obicleandb_level":"family","obicleandb_trusted":2.2137847111025621e-13,"species_name":"Sorex unguiculatus","species_taxid":62275,"taxid":62275}
ttagccctaaacttaggtatttaatctaacaaaaatacccgtcagagaactactagcaat
agcttaaaactcaaaggacttggcggtgctttatatccct
>AL355887 {"count":2,"definition":"Human chromosome 14 NA sequence BAC R-179O11 of library RPCI-11 from chromosome 14 of Homo sapiens (Human)XXKW HTG.; HTGS_ACTIVFIN.","family_name":"Hominidae","family_taxid":9604,"genus_name":"Homo","genus_taxid":9605,"obicleandb_level":"genus","obicleandb_trusted":0,"species_name":"Homo sapiens","species_taxid":9606,"taxid":9606}
ttagccctaaactctagtagttacattaacaaaaccattcgtcagaatactacgagcaac
agcttaaaactcaaaggacctggcagttctttatatccct

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@HELIUM_000100422_612GNAAXX:7:108:5640:3823#0/1 ali_length=62; mode=alignment; pairing_mismatches={'(T:26)->(G:13)':62,'(T:34)->(G:18)':48}; score=484; seq_b_single=46; ali_dir=left; score_norm=0.968; seq_a_single=46; seq_ab_match=60; sequence definition here
ccgcctcctttagataccccactatgcttagccctaaacacaagtaattaatataacaaaattgttcgccagagtactaccggcaatagcttaaaactcaaaggacttggcggtgctttatacccttctagaggagcctgttctaaggaggcgg
+
CCCCCCCBCCCCCCCCCCCCCCCCCCCCCCBCCCCCBCCCCCCC<CcCccbe[`F`accXV<TA\RYU\\ee_e[XZ[XEEEEEEEEEE?EEEEEEEEEEDEEEEEEECCCCCCCCCCCCCCCCCCCCCCCACCCCCACCCCCCCCCCCCCCCC
@HELIUM_000100422_612GNAAXX:7:97:14311:19299#0/1 mode=alignment; seq_a_single=46; seq_ab_match=52; score=283; score_norm=0.839; seq_b_single=46; ali_dir=left; ali_length=62; pairing_mismatches={'(A:02)->(G:30)':104,'(A:34)->(G:14)':64,'(C:02)->(A:30)':86,'(C:02)->(T:20)':108,'(C:27)->(G:32)':83,'(C:34)->(G:18)':57,'(T:02)->(G:26)':87,'(T:22)->(G:14)':66,'(T:29)->(G:11)':62,'(T:32)->(G:30)':48}; sequence definition here
ccgcctcctttagataccccactatgcttagccctaaacacaagtaattaatataacaaaattgttcgccagagtactaccggcaatagcttaaaactcaaaggacttggcggtgctttatacccttctagaggagcctgttctaaggaggcgg
ccgcctcctttagataccccactatgcttagccctaaacacaagtaattaatataacaaaattattcgccagagtactaccggcaagagcttaaaactcaaaggacttggcggtgctttatacccttctagaggagcctgttctaaggaggcgg
+
CCCCCCCCCCCCCCCCCCCCCCCBBCCC?BCCCCCBC?CCCC@@;AVA`cWeb_TYC\UIN?IDP8QJMKRPVGLQAFPPc`AbAFB5A4>AAA56A><>8>>F@A><8??@BB+<?;?C@9CCCCCC<CC=CCCCCCCCCBC?CBCCCCC@CC

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@HELIUM_000100422_612GNAAXX:7:108:5640:3823#0/1 {"ali_dir":"left","ali_length":62,"mode":"alignment","pairing_mismatches":{"(T:26)->(G:13)":62,"(T:34)->(G:18)":48},"score":484,"score_norm":0.968,"seq_a_single":46,"seq_ab_match":60,"seq_b_single":46,"definition":"sequence definition here"}
ccgcctcctttagataccccactatgcttagccctaaacacaagtaattaatataacaaaattgttcgccagagtactaccggcaatagcttaaaactcaaaggacttggcggtgctttatacccttctagaggagcctgttctaaggaggcgg
+
CCCCCCCBCCCCCCCCCCCCCCCCCCCCCCBCCCCCBCCCCCCC<CcCccbe[`F`accXV<TA\RYU\\ee_e[XZ[XEEEEEEEEEE?EEEEEEEEEEDEEEEEEECCCCCCCCCCCCCCCCCCCCCCCACCCCCACCCCCCCCCCCCCCCC
@HELIUM_000100422_612GNAAXX:7:97:14311:19299#0/1 {"ali_dir":"left","ali_length":62,"mode":"alignment","pairing_mismatches":{"(A:02)->(G:30)":104,"(A:34)->(G:14)":64,"(C:02)->(A:30)":86,"(C:02)->(T:20)":108,"(C:27)->(G:32)":83,"(C:34)->(G:18)":57,"(T:02)->(G:26)":87,"(T:22)->(G:14)":66,"(T:29)->(G:11)":62,"(T:32)->(G:30)":48},"score":283,"score_norm":0.839,"seq_a_single":46,"seq_ab_match":52,"seq_b_single":46,"definition":"sequence definition here"}
ccgcctcctttagataccccactatgcttagccctaaacacaagtaattaatataacaaaattattcgccagagtactaccggcaagagcttaaaactcaaaggacttggcggtgctttatacccttctagaggagcctgttctaaggaggcgg
+
CCCCCCCCCCCCCCCCCCCCCCCBBCCC?BCCCCCBC?CCCC@@;AVA`cWeb_TYC\UIN?IDP8QJMKRPVGLQAFPPc`AbAFB5A4>AAA56A><>8>>F@A><8??@BB+<?;?C@9CCCCCC<CC=CCCCCCCCCBC?CBCCCCC@CC

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>HQ324066 {"definition":"Trinia glauca tRNA-Leu (trnL) gene, intron; chloroplast.","scientific_name":"chloroplast Trinia glauca","taxid":1000432}
gggcaatcctgagccaaatcctattttacaaaaacaaacaaaggcccagaaggtgaaaaa
aggataggtgcagagactcaatgg

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LOCUS HQ324066 84 bp DNA linear PLN 18-NOV-2011
DEFINITION Trinia glauca tRNA-Leu (trnL) gene, intron; chloroplast.
ACCESSION HQ324066
VERSION HQ324066.1
KEYWORDS .
SOURCE chloroplast Trinia glauca
ORGANISM Trinia glauca
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
Pentapetalae; asterids; campanulids; Apiales; Apiaceae; Apioideae;
apioid superclade; Selineae; Trinia.
REFERENCE 1 (bases 1 to 84)
AUTHORS Raye,G., Miquel,C., Coissac,E., Redjadj,C., Loison,A. and
Taberlet,P.
TITLE New insights on diet variability revealed by DNA barcoding and
high-throughput pyrosequencing: chamois diet in autumn as a case
study
JOURNAL Ecol. Res. 26 (2), 265-276 (2011)
REFERENCE 2 (bases 1 to 84)
AUTHORS Raye,G.
TITLE Direct Submission
JOURNAL Submitted (25-SEP-2010) LECA, Universite Joseph Fourier, Bp 53,
2233 rue de la Piscine, Grenoble 38041, France
FEATURES Location/Qualifiers
source 1..84
/organism="Trinia glauca"
/organelle="plastid:chloroplast"
/mol_type="genomic DNA"
/db_xref="taxon:1000432"
/geo_loc_name="France"
gene <1..>84
/gene="trnL"
/note="tRNA-Leu; tRNA-Leu(UAA)"
intron <1..>84
/gene="trnL"
/note="P6 loop"
ORIGIN
1 gggcaatcct gagccaaatc ctattttaca aaaacaaaca aaggcccaga aggtgaaaaa
61 aggataggtg cagagactca atgg
//

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<title>JSON format on OBITools4 documentation</title>
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>AB061527 {"count":1,"definition":"Sorex unguiculatus mitochondrial NA, complete genome.","family_name":"Soricidae","family_taxid":9376,"genus_name":"Sorex","genus_taxid":9379,"obicleandb_level":"family","obicleandb_trusted":2.2137847111025621e-13,"species_name":"Sorex unguiculatus","species_taxid":62275,"taxid":62275}
ttagccctaaacttaggtatttaatctaacaaaaatacccgtcagagaactactagcaat
agcttaaaactcaaaggacttggcggtgctttatatccct
>AL355887 {"count":2,"definition":"Human chromosome 14 NA sequence BAC R-179O11 of library RPCI-11 from chromosome 14 of Homo sapiens (Human)XXKW HTG.; HTGS_ACTIVFIN.","family_name":"Hominidae","family_taxid":9604,"genus_name":"Homo","genus_taxid":9605,"obicleandb_level":"genus","obicleandb_trusted":0,"species_name":"Homo sapiens","species_taxid":9606,"taxid":9606}
ttagccctaaactctagtagttacattaacaaaaccattcgtcagaatactacgagcaac
agcttaaaactcaaaggacctggcagttctttatatccct

8
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@AB061527 {"count":1,"definition":"Sorex unguiculatus mitochondrial NA, complete genome.","family_name":"Soricidae","family_taxid":9376,"genus_name":"Sorex","genus_taxid":9379,"obicleandb_level":"family","species_name":"Sorex unguiculatus","species_taxid":62275,"taxid":62275}
ttagccctaaacttaggtatttaatctaacaaaaatacccgtcagagaactactagcaat
+
BBFFBFFHHHHHFFFFFHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
@AL355887 {"count":2,"definition":"Human chromosome 14 NA sequence BAC R-179O11 of library RPCI-11 from chromosome 14 of Homo sapiens (Human)XXKW HTG.; HTGS_ACTIVFIN.","family_name":"Hominidae","family_taxid":9604,"genus_name":"Homo","genus_taxid":9605,"obicleandb_level":"genus","species_name":"Homo sapiens","species_taxid":9606,"taxid":9606}
ttagccctaaactctagtagttacattaacaaaaccattcgtcagaatactacgagcaac
+
@BBFFBFFHHHGGGFFFFFHHHJJJHHHHHHHHHJHHHHHHHHHHHHHHHHHHHHHHHHH

36
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[
{
"annotations": {
"count": 1,
"definition": "Sorex unguiculatus mitochondrial NA, complete genome.",
"family_name": "Soricidae",
"family_taxid": "9376",
"genus_name": "Sorex",
"genus_taxid": "9379",
"obicleandb_level": "family",
"obicleandb_trusted": 2.2137847111025621e-13,
"species_name": "Sorex unguiculatus",
"species_taxid": "62275",
"taxid": "62275"
},
"id": "AB061527",
"sequence": "ttagccctaaacttaggtatttaatctaacaaaaatacccgtcagagaactactagcaatagcttaaaactcaaaggacttggcggtgctttatatccct"
},
{
"annotations": {
"count": 2,
"definition": "Human chromosome 14 NA sequence BAC R-179O11 of library RPCI-11 from chromosome 14 of Homo sapiens (Human)XXKW HTG.; HTGS_ACTIVFIN.",
"family_name": "Hominidae",
"family_taxid": "9604",
"genus_name": "Homo",
"genus_taxid": "9605",
"obicleandb_level": "genus",
"obicleandb_trusted": 0,
"species_name": "Homo sapiens",
"species_taxid": "9606",
"taxid": "9606"
},
"id": "AL355887",
"sequence": "ttagccctaaactctagtagttacattaacaaaaccattcgtcagaatactacgagcaacagcttaaaactcaaaggacctggcagttctttatatccct"
}
]

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[
{
"annotations": {
"count": 1,
"definition": "Sorex unguiculatus mitochondrial NA, complete genome.",
"family_name": "Soricidae",
"family_taxid": "9376",
"genus_name": "Sorex",
"genus_taxid": "9379",
"obicleandb_level": "family",
"species_name": "Sorex unguiculatus",
"species_taxid": "62275",
"taxid": "62275"
},
"id": "AB061527",
"qualities": "BBFFBFFHHHHHFFFFFHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH",
"sequence": "ttagccctaaacttaggtatttaatctaacaaaaatacccgtcagagaactactagcaat"
},
{
"annotations": {
"count": 2,
"definition": "Human chromosome 14 NA sequence BAC R-179O11 of library RPCI-11 from chromosome 14 of Homo sapiens (Human)XXKW HTG.; HTGS_ACTIVFIN.",
"family_name": "Hominidae",
"family_taxid": "9604",
"genus_name": "Homo",
"genus_taxid": "9605",
"obicleandb_level": "genus",
"species_name": "Homo sapiens",
"species_taxid": "9606",
"taxid": "9606"
},
"id": "AL355887",
"qualities": "@BBFFBFFHHHGGGFFFFFHHHJJJHHHHHHHHHJHHHHHHHHHHHHHHHHHHHHHHHHH",
"sequence": "ttagccctaaactctagtagttacattaacaaaaccattcgtcagaatactacgagcaac"
}
]