Make cleaning

jupyterhub_volumes/web/obidoc/formats/embl/index.xml

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+<?xml version="1.0" encoding="utf-8" standalone="yes"?>
+<rss version="2.0" xmlns:atom="http://www.w3.org/2005/Atom">
+  <channel>
+    <title>EMBL Flat File format on OBITools4 documentation</title>
+    <link>http://metabar:8888/obidoc/formats/embl/</link>
+    <description>Recent content in EMBL Flat File format on OBITools4 documentation</description>
+    <generator>Hugo</generator>
+    <language>en-us</language>
+    <atom:link href="http://metabar:8888/obidoc/formats/embl/index.xml" rel="self" type="application/rss+xml" />
+  </channel>
+</rss>

jupyterhub_volumes/web/obidoc/formats/embl/sample.embl

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+ID   HQ324066; SV 1; linear; genomic DNA; STD; PLN; 84 BP.
+XX
+AC   HQ324066;
+XX
+DT   30-MAR-2011 (Rel. 108, Created)
+DT   20-NOV-2011 (Rel. 110, Last updated, Version 2)
+XX
+DE   Trinia glauca tRNA-Leu (trnL) gene, intron; chloroplast.
+XX
+KW   .
+XX
+OS   Trinia glauca
+OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
+OC   Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
+OC   asterids; campanulids; Apiales; Apiaceae; Apioideae; apioid superclade;
+OC   Selineae; Trinia.
+OG   Plastid:Chloroplast
+XX
+RN   [1]
+RP   1-84
+RA   Raye G., Miquel C., Coissac E., Redjadj C., Loison A., Taberlet P.;
+RT   "New insights on diet variability revealed by DNA barcoding and
+RT   high-throughput pyrosequencing: chamois diet in autumn as a case study";
+RL   Ecol. Res. 26(2):265-276(2011).
+XX
+RN   [2]
+RP   1-84
+RA   Raye G.;
+RT   ;
+RL   Submitted (25-SEP-2010) to the INSDC.
+RL   LECA, Universite Joseph Fourier, Bp 53, 2233 rue de la Piscine, Grenoble
+RL   38041, France
+XX
+DR   MD5; f2c1ac0a050529656590007b565d327d.
+XX
+FH   Key             Location/Qualifiers
+FH
+FT   source          1..84
+FT                   /organism="Trinia glauca"
+FT                   /organelle="plastid:chloroplast"
+FT                   /mol_type="genomic DNA"
+FT                   /country="France"
+FT                   /db_xref="taxon:1000432"
+FT   gene            <1..>84
+FT                   /gene="trnL"
+FT                   /note="tRNA-Leu; tRNA-Leu(UAA)"
+FT   intron          <1..>84
+FT                   /gene="trnL"
+FT                   /note="P6 loop"
+XX
+SQ   Sequence 84 BP; 35 A; 16 C; 20 G; 13 T; 0 other;
+     gggcaatcct gagccaaatc ctattttaca aaaacaaaca aaggcccaga aggtgaaaaa        60
+     aggataggtg cagagactca atgg                                               84
+//

jupyterhub_volumes/web/obidoc/formats/embl/sample.fasta

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+>HQ324066 {"definition":"Trinia glauca tRNA-Leu (trnL) gene, intron; chloroplast.","scientific_name":"Trinia glauca","taxid":1000432}
+gggcaatcctgagccaaatcctattttacaaaaacaaacaaaggcccagaaggtgaaaaa
+aggataggtgcagagactcaatgg