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This commit is contained in:
Eric Coissac
2025-11-16 14:56:03 +01:00
parent 35d275c104
commit 30b7175702
367 changed files with 170866 additions and 11173 deletions
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10
jupyterhub_volumes/web/obidoc/obitools/obigrep/five_ids.fasta Normal file
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>seqA1
cgatgctgcatgctagtgctagtcgat
>seqB1
tagctagctagctagctagctagctagcta
>seqA2
gtagctagctagctagctagctagctaga
>seqC1
cgatgctgcatgctagtgctagtcgatga
>seqB2
tagctagctagctagctagctagctagcta

10
jupyterhub_volumes/web/obidoc/obitools/obigrep/five_tags.fasta Normal file
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>seqA1 {"count":1,"tata":"bar","taxid":"taxon:9606 [Homo sapiens]@species","toto":"titi"}
cgatgctgcatgctagtgctagtcgat
>seqB1 {"tata":"bar","taxid":"taxon:63221 [Homo sapiens neanderthalensis]@subspecies","toto":"tata"}
tagctagctagctagctagctagctagcta
>seqA2 {"count":5,"tata":"foo","taxid":"taxon:9605 [Homo]@genus","toto":"tutu"}
gtagctagctagctagctagctagctaga
>seqC1 {"count":15,"tata":"foo","taxid":"taxon:9604 [Hominidae]@family","toto":"foo"}
cgatgctccatgctagtgctagtcgatga
>seqB2 {"count":25,"tata":"bar"}
cgatggctccatgctagtgctagtcgatga

16
jupyterhub_volumes/web/obidoc/obitools/obigrep/forward.fastq Normal file
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@M01334:147:000000000-LBRVD:1:1101:14968:1570 1:N:0:CTCACCAA+CTAGGCAA
TGTTCCACGGGCAATCCTGAGCCAAATCTTTCATTTTGAAAAAATGAGAGATATAATGTATCTCTTATTTATTATAAGAAATAAAATATTTCTTATCTAATATTAAAGTTAGGTGCAGAGACTCAATGGGTGGAACTAGATCGGATGTGCA
+
11>A>@3@A11>ACFFEG110BFB00BAFGHE2DFGG201110/B11111/D1D2222D2FDFDFGDGHHBGG2F222110D11@1D1FGHFHGFF@GE1F2FG22112B220F1@111/0>BF11B210B>//11B1<1BB<///<1122
@M01334:147:000000000-LBRVD:1:1101:15946:1586 1:N:0:CTCACCAA+CTAGGCAA
TCCTAACCCCATTGAGTCTCTGCACCTATCTTTAATATTAGATAAGAAATATTTTATTTCTTATAATAAATAAGAGATATTTTATATCTCTCATTTTTTCAAAATGAAAGATTTGGCTCAGGATTGCCCACGTAACGGAGATCGGAAGAGC
+
1>>A111>>>AFGGB1FFGFGFF3BBF1GGHHH33D2GH2B1D211110D1DGHHBFGGGGG2FA2F221F21A1F0D1DGHH2FAFFGFHFFGHHHHGG22@1BD111@0FFHE11GC1001BGF1B1B/EF00??////BF////<000
@M01334:147:000000000-LBRVD:1:1101:15399:1590 1:N:0:CTCACCAA+CTAGGCAA
TGTTCCACCCATTGAGTCTCTGCACCTATCTTTAATATTAGATAAGAAATATTTTACTTCTTATAATAAATAAGAGTTATTTTATATCTCTCATTTTTTCAAAATGAAAGATTTGGCTCAGGATTGCCCGTGGAACTAGATCGGAAGAGCA
+
11>A>@3B>>1CF111BBFAG3A3AAF1FFGHHF3FBGH221F211110D1DGHH2BBGBFF2F22D221D211111A2DDGG2F2FFFEGD1FFHHHGFD221B111110BFGD11F@1001BF0@@1/EA//1>F1B1FD/////00<1
@M01334:147:000000000-LBRVD:1:1101:13773:1687 1:N:0:CTCACCAA+CTAGGCAA
CTCGGATCACCATTGAGTCTCTGCACCTATCTTTAATATTAGATAAGAAAAAATATTATTTCTTATCTGAAATAAGAAATATTTTATATATTTCTTTTTCTCAAAATGAAAGATTTGGCTCAGGATTGCCCTGATCCGAGGGATAGCACCA
+
3AAAAAADFFFFGGGGFGGGGGHHHHHHFHHHHHHHHGHHHHGHGGHFFHHHCGFHHHHHHHHHHHHHGHHGGFHFFHHHGHHHHBHHHGHHHHHHHHHHHHHFFHHFBDFBCGHHF4BGHFGFFHHBDGFHHEHHFAAEECEGF3FDGFC

2815
jupyterhub_volumes/web/obidoc/obitools/obigrep/index.html Normal file
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File diff suppressed because it is too large Load Diff

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jupyterhub_volumes/web/obidoc/obitools/obigrep/index.xml Normal file
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<?xml version="1.0" encoding="utf-8" standalone="yes"?>
<rss version="2.0" xmlns:atom="http://www.w3.org/2005/Atom">
<channel>
<title>obigrep on OBITools4 documentation</title>
<link>http://metabar:8888/obidoc/obitools/obigrep/</link>
<description>Recent content in obigrep on OBITools4 documentation</description>
<generator>Hugo</generator>
<language>en-us</language>
<lastBuildDate></lastBuildDate>
<atom:link href="http://metabar:8888/obidoc/obitools/obigrep/index.xml" rel="self" type="application/rss+xml" />
</channel>
</rss>

16
jupyterhub_volumes/web/obidoc/obitools/obigrep/reverse.fastq Normal file
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@M01334:147:000000000-LBRVD:1:1101:14968:1570 2:N:0:CTCACCAA+CTAGGCAA
TTTTCCTCCCTTTTTTTCTCTGCACCTTTCTTTTTTATTAGTTTTTTATTATTTTTTTTCTTTTTTTATTTTATTGATACTTTATATCTCTCTTTTTTTCTTTTTTATTGATTTTTCTCTGGTTTTCCCTTGTTACTTGTTCTTTTTTGCT
+
11>>1131111BB111A0B3B313A0B1BAFGG11E/DG222B22///1D2DDGG1AE>>FG1D1/>/12B221212@21BFD2B2B2B2F11BFGHEEC1111B//1212BBF110@22111@@/2111?01111@111?111111--11
@M01334:147:000000000-LBRVD:1:1101:15946:1586 2:N:0:CTCACCAA+CTAGGCAA
CCGTTACGTGGGCAATCCTGAGCCAATTCTTTCTTTTTGAAAAAATGAGAGATATAAAATATCTCTTATTTATTATAAGAAATAAAATATTTCTTATCTAATATTAATGATAGGTGCAGTGACTCTATGGGGTTAGGTAGTTCGGATGAGC
+
111>>111B111111BA0B1101B001BAGGH22DGGH?01110/B11111/D1D2221D1DBEDGH1GHH2GG2F222110D@111D1DFGEGFBG@GB1B2FG22222B220B11111111B@11B210/?E/00B211B2/////111
@M01334:147:000000000-LBRVD:1:1101:15399:1590 2:N:0:CTCACCAA+CTAGGCAA
TTTTCCTCGGGCTATCCTGAGCCAAATCTTTCCTTTTGAAAAATTTAGAGATATAAAATATCTCTTATTTATTTTATGTAGTATTATATTTCTTATCTAATATTAAATTTAGTTGCTTTTTCTCATTTTGTTTTACTTTTTCTTTTTTGCT
+
11>>1131111111B11B1101A000B1DFF21DDFG1011100B122111D1D2221D1DADAFG1DGH2FG2D212222D2222D2DAF2FG2D@F21B2DE22122B221@11111110B222B222B00021B221B011111//11
@M01334:147:000000000-LBRVD:1:1101:13773:1687 2:N:0:CTCACCAA+CTAGGCAA
TGATAGCAGGGCTATCCTGAGCCAAATCCGTGTTTTGAGAAAACAAGGGGGTTCTCGAACTAGAATACAAAAGAAAAGGATAGGTGCAGAGACTCAATGGTGCTATCCCTCGGATCAGGGCAATCCTTAGCCAAATCTTTCATTTTTTGAA
+
111>13@1111>11B1AF11BABC00B110BAFGGH0000DFAB//0///EEECGFA10AG1111D@@11100/0000/0F110B11@11/0>FC@1B>1B11FEFEC>E>///?<0110/?/FF<G22111@00@<GHHB>FHHH1///1

2
jupyterhub_volumes/web/obidoc/obitools/obigrep/seqAB.txt Normal file
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seqA1
seqB1

12
jupyterhub_volumes/web/obidoc/obitools/obigrep/six_invalid.fasta Normal file
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>seqA1 {"count":1,"tata":"bar","taxid":"taxon:9606 [Homo sapiens]@species","toto":"titi"}
cgatgctgcatgctagtgctagtcgat
>seqB1 {"tata":"bar","taxid":"taxon:63221 [Homo sapiens neanderthalensis]@subspecies","toto":"tata"}
tagctagctagctagctagctagctagcta
>seqA2 {"count":5,"tata":"foo","taxid":"taxon:9605 [Homo]@genus","toto":"tutu"}
gtagctagctagctagctagctagctaga
>seqC1 {"count":15,"tata":"foo","taxid":"taxon:9604 [Hominidae]@family","toto":"foo"}
cgatgctgcatgctagtgctagtcgatga
>seqB2 {"count":25,"tata":"bar"}
tagctagctagctagctagctagctagcta
>seqD1 {"taxid":"taxon:9607"}
gctagctagctgacgatgcatgcgtaggtgcagttgcgta

9
jupyterhub_volumes/web/obidoc/obitools/obigrep/some_uniq_seq.fasta Normal file
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>Seq_1 {"count":2,"merged_sample":{"15a_F730814":1,"29a_F260619":1}}
ttagccctaaacacaagtaattaatataacaaaattattcgccagagtactaccggcaat
agctyaaaactcaaaggacttggcggtgctttataccctt
>Seq_2 {"count":22,"merged_sample":{"15a_F730814":12,"29a_F260619":10}}
ttagccctaaacacaagtaattaatataacaaaattattcgccagagtactaccggcaat
atcttaaaactcaaaggacttggcggtgctttataccctt
>Seq_3 {"count":22,"merged_sample":{"15a_F730814":15,"29a_F260619":7}}
ttagccctaaacacaagtaattaatataacaaaattattcgccagagtactaccggcgat
agcttaaaactcaaaggacttggcggtgctttataccctt

12
jupyterhub_volumes/web/obidoc/obitools/obigrep/start_t_R1.fastq Normal file
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@M01334:147:000000000-LBRVD:1:1101:14968:1570 {"definition":"1:N:0:CTCACCAA+CTAGGCAA"}
tgttccacgggcaatcctgagccaaatctttcattttgaaaaaatgagagatataatgtatctcttatttattataagaaataaaatatttcttatctaatattaaagttaggtgcagagactcaatgggtggaactagatcggatgtgca
+
11>A>@3@A11>ACFFEG110BFB00BAFGHE2DFGG201110/B11111/D1D2222D2FDFDFGDGHHBGG2F222110D11@1D1FGHFHGFF@GE1F2FG22112B220F1@111/0>BF11B210B>//11B1<1BB<///<1122
@M01334:147:000000000-LBRVD:1:1101:15946:1586 {"definition":"1:N:0:CTCACCAA+CTAGGCAA"}
tcctaaccccattgagtctctgcacctatctttaatattagataagaaatattttatttcttataataaataagagatattttatatctctcattttttcaaaatgaaagatttggctcaggattgcccacgtaacggagatcggaagagc
+
1>>A111>>>AFGGB1FFGFGFF3BBF1GGHHH33D2GH2B1D211110D1DGHHBFGGGGG2FA2F221F21A1F0D1DGHH2FAFFGFHFFGHHHHGG22@1BD111@0FFHE11GC1001BGF1B1B/EF00??////BF////<000
@M01334:147:000000000-LBRVD:1:1101:15399:1590 {"definition":"1:N:0:CTCACCAA+CTAGGCAA"}
tgttccacccattgagtctctgcacctatctttaatattagataagaaatattttacttcttataataaataagagttattttatatctctcattttttcaaaatgaaagatttggctcaggattgcccgtggaactagatcggaagagca
+
11>A>@3B>>1CF111BBFAG3A3AAF1FFGHHF3FBGH221F211110D1DGHH2BBGBFF2F22D221D211111A2DDGG2F2FFFEGD1FFHHHGFD221B111110BFGD11F@1001BF0@@1/EA//1>F1B1FD/////00<1

12
jupyterhub_volumes/web/obidoc/obitools/obigrep/start_t_R2.fastq Normal file
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@M01334:147:000000000-LBRVD:1:1101:14968:1570 {"definition":"2:N:0:CTCACCAA+CTAGGCAA"}
ttttcctccctttttttctctgcacctttcttttttattagttttttattattttttttctttttttattttattgatactttatatctctctttttttcttttttattgatttttctctggttttcccttgttacttgttcttttttgct
+
11>>1131111BB111A0B3B313A0B1BAFGG11E/DG222B22///1D2DDGG1AE>>FG1D1/>/12B221212@21BFD2B2B2B2F11BFGHEEC1111B//1212BBF110@22111@@/2111?01111@111?111111--11
@M01334:147:000000000-LBRVD:1:1101:15946:1586 {"definition":"2:N:0:CTCACCAA+CTAGGCAA"}
ccgttacgtgggcaatcctgagccaattctttctttttgaaaaaatgagagatataaaatatctcttatttattataagaaataaaatatttcttatctaatattaatgataggtgcagtgactctatggggttaggtagttcggatgagc
+
111>>111B111111BA0B1101B001BAGGH22DGGH?01110/B11111/D1D2221D1DBEDGH1GHH2GG2F222110D@111D1DFGEGFBG@GB1B2FG22222B220B11111111B@11B210/?E/00B211B2/////111
@M01334:147:000000000-LBRVD:1:1101:15399:1590 {"definition":"2:N:0:CTCACCAA+CTAGGCAA"}
ttttcctcgggctatcctgagccaaatctttccttttgaaaaatttagagatataaaatatctcttatttattttatgtagtattatatttcttatctaatattaaatttagttgctttttctcattttgttttactttttcttttttgct
+
11>>1131111111B11B1101A000B1DFF21DDFG1011100B122111D1D2221D1DADAFG1DGH2FG2D212222D2222D2DAF2FG2D@F21B2DE22122B221@11111110B222B222B00021B221B011111//11

8
jupyterhub_volumes/web/obidoc/obitools/obigrep/start_t_and_R1.fastq Normal file
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@@ -0,0 +1,8 @@
@M01334:147:000000000-LBRVD:1:1101:14968:1570 {"definition":"1:N:0:CTCACCAA+CTAGGCAA"}
tgttccacgggcaatcctgagccaaatctttcattttgaaaaaatgagagatataatgtatctcttatttattataagaaataaaatatttcttatctaatattaaagttaggtgcagagactcaatgggtggaactagatcggatgtgca
+
11>A>@3@A11>ACFFEG110BFB00BAFGHE2DFGG201110/B11111/D1D2222D2FDFDFGDGHHBGG2F222110D11@1D1FGHFHGFF@GE1F2FG22112B220F1@111/0>BF11B210B>//11B1<1BB<///<1122
@M01334:147:000000000-LBRVD:1:1101:15399:1590 {"definition":"1:N:0:CTCACCAA+CTAGGCAA"}
tgttccacccattgagtctctgcacctatctttaatattagataagaaatattttacttcttataataaataagagttattttatatctctcattttttcaaaatgaaagatttggctcaggattgcccgtggaactagatcggaagagca
+
11>A>@3B>>1CF111BBFAG3A3AAF1FFGHHF3FBGH221F211110D1DGHH2BBGBFF2F22D221D211111A2DDGG2F2FFFEGD1FFHHHGFD221B111110BFGD11F@1001BF0@@1/EA//1>F1B1FD/////00<1

8
jupyterhub_volumes/web/obidoc/obitools/obigrep/start_t_and_R2.fastq Normal file
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@M01334:147:000000000-LBRVD:1:1101:14968:1570 {"definition":"2:N:0:CTCACCAA+CTAGGCAA"}
ttttcctccctttttttctctgcacctttcttttttattagttttttattattttttttctttttttattttattgatactttatatctctctttttttcttttttattgatttttctctggttttcccttgttacttgttcttttttgct
+
11>>1131111BB111A0B3B313A0B1BAFGG11E/DG222B22///1D2DDGG1AE>>FG1D1/>/12B221212@21BFD2B2B2B2F11BFGHEEC1111B//1212BBF110@22111@@/2111?01111@111?111111--11
@M01334:147:000000000-LBRVD:1:1101:15399:1590 {"definition":"2:N:0:CTCACCAA+CTAGGCAA"}
ttttcctcgggctatcctgagccaaatctttccttttgaaaaatttagagatataaaatatctcttatttattttatgtagtattatatttcttatctaatattaaatttagttgctttttctcattttgttttactttttcttttttgct
+
11>>1131111111B11B1101A000B1DFF21DDFG1011100B122111D1D2221D1DADAFG1DGH2FG2D212222D2222D2DAF2FG2D@F21B2DE22122B221@11111110B222B222B00021B221B011111//11

4
jupyterhub_volumes/web/obidoc/obitools/obigrep/start_t_andnot_R1.fastq Normal file
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@M01334:147:000000000-LBRVD:1:1101:15946:1586 {"definition":"1:N:0:CTCACCAA+CTAGGCAA"}
tcctaaccccattgagtctctgcacctatctttaatattagataagaaatattttatttcttataataaataagagatattttatatctctcattttttcaaaatgaaagatttggctcaggattgcccacgtaacggagatcggaagagc
+
1>>A111>>>AFGGB1FFGFGFF3BBF1GGHHH33D2GH2B1D211110D1DGHHBFGGGGG2FA2F221F21A1F0D1DGHH2FAFFGFHFFGHHHHGG22@1BD111@0FFHE11GC1001BGF1B1B/EF00??////BF////<000

4
jupyterhub_volumes/web/obidoc/obitools/obigrep/start_t_andnot_R2.fastq Normal file
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@@ -0,0 +1,4 @@
@M01334:147:000000000-LBRVD:1:1101:15946:1586 {"definition":"2:N:0:CTCACCAA+CTAGGCAA"}
ccgttacgtgggcaatcctgagccaattctttctttttgaaaaaatgagagatataaaatatctcttatttattataagaaataaaatatttcttatctaatattaatgataggtgcagtgactctatggggttaggtagttcggatgagc
+
111>>111B111111BA0B1101B001BAGGH22DGGH?01110/B11111/D1D2221D1DBEDGH1GHH2GG2F222110D@111D1DFGEGFBG@GB1B2FG22222B220B11111111B@11B210/?E/00B211B2/////111

16
jupyterhub_volumes/web/obidoc/obitools/obigrep/start_t_or_R1.fastq Normal file
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@@ -0,0 +1,16 @@
@M01334:147:000000000-LBRVD:1:1101:14968:1570 {"definition":"1:N:0:CTCACCAA+CTAGGCAA"}
tgttccacgggcaatcctgagccaaatctttcattttgaaaaaatgagagatataatgtatctcttatttattataagaaataaaatatttcttatctaatattaaagttaggtgcagagactcaatgggtggaactagatcggatgtgca
+
11>A>@3@A11>ACFFEG110BFB00BAFGHE2DFGG201110/B11111/D1D2222D2FDFDFGDGHHBGG2F222110D11@1D1FGHFHGFF@GE1F2FG22112B220F1@111/0>BF11B210B>//11B1<1BB<///<1122
@M01334:147:000000000-LBRVD:1:1101:15946:1586 {"definition":"1:N:0:CTCACCAA+CTAGGCAA"}
tcctaaccccattgagtctctgcacctatctttaatattagataagaaatattttatttcttataataaataagagatattttatatctctcattttttcaaaatgaaagatttggctcaggattgcccacgtaacggagatcggaagagc
+
1>>A111>>>AFGGB1FFGFGFF3BBF1GGHHH33D2GH2B1D211110D1DGHHBFGGGGG2FA2F221F21A1F0D1DGHH2FAFFGFHFFGHHHHGG22@1BD111@0FFHE11GC1001BGF1B1B/EF00??////BF////<000
@M01334:147:000000000-LBRVD:1:1101:15399:1590 {"definition":"1:N:0:CTCACCAA+CTAGGCAA"}
tgttccacccattgagtctctgcacctatctttaatattagataagaaatattttacttcttataataaataagagttattttatatctctcattttttcaaaatgaaagatttggctcaggattgcccgtggaactagatcggaagagca
+
11>A>@3B>>1CF111BBFAG3A3AAF1FFGHHF3FBGH221F211110D1DGHH2BBGBFF2F22D221D211111A2DDGG2F2FFFEGD1FFHHHGFD221B111110BFGD11F@1001BF0@@1/EA//1>F1B1FD/////00<1
@M01334:147:000000000-LBRVD:1:1101:13773:1687 {"definition":"1:N:0:CTCACCAA+CTAGGCAA"}
ctcggatcaccattgagtctctgcacctatctttaatattagataagaaaaaatattatttcttatctgaaataagaaatattttatatatttctttttctcaaaatgaaagatttggctcaggattgccctgatccgagggatagcacca
+
3AAAAAADFFFFGGGGFGGGGGHHHHHHFHHHHHHHHGHHHHGHGGHFFHHHCGFHHHHHHHHHHHHHGHHGGFHFFHHHGHHHHBHHHGHHHHHHHHHHHHHFFHHFBDFBCGHHF4BGHFGFFHHBDGFHHEHHFAAEECEGF3FDGFC

16
jupyterhub_volumes/web/obidoc/obitools/obigrep/start_t_or_R2.fastq Normal file
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@@ -0,0 +1,16 @@
@M01334:147:000000000-LBRVD:1:1101:14968:1570 {"definition":"2:N:0:CTCACCAA+CTAGGCAA"}
ttttcctccctttttttctctgcacctttcttttttattagttttttattattttttttctttttttattttattgatactttatatctctctttttttcttttttattgatttttctctggttttcccttgttacttgttcttttttgct
+
11>>1131111BB111A0B3B313A0B1BAFGG11E/DG222B22///1D2DDGG1AE>>FG1D1/>/12B221212@21BFD2B2B2B2F11BFGHEEC1111B//1212BBF110@22111@@/2111?01111@111?111111--11
@M01334:147:000000000-LBRVD:1:1101:15946:1586 {"definition":"2:N:0:CTCACCAA+CTAGGCAA"}
ccgttacgtgggcaatcctgagccaattctttctttttgaaaaaatgagagatataaaatatctcttatttattataagaaataaaatatttcttatctaatattaatgataggtgcagtgactctatggggttaggtagttcggatgagc
+
111>>111B111111BA0B1101B001BAGGH22DGGH?01110/B11111/D1D2221D1DBEDGH1GHH2GG2F222110D@111D1DFGEGFBG@GB1B2FG22222B220B11111111B@11B210/?E/00B211B2/////111
@M01334:147:000000000-LBRVD:1:1101:15399:1590 {"definition":"2:N:0:CTCACCAA+CTAGGCAA"}
ttttcctcgggctatcctgagccaaatctttccttttgaaaaatttagagatataaaatatctcttatttattttatgtagtattatatttcttatctaatattaaatttagttgctttttctcattttgttttactttttcttttttgct
+
11>>1131111111B11B1101A000B1DFF21DDFG1011100B122111D1D2221D1DADAFG1DGH2FG2D212222D2222D2DAF2FG2D@F21B2DE22122B221@11111110B222B222B00021B221B011111//11
@M01334:147:000000000-LBRVD:1:1101:13773:1687 {"definition":"2:N:0:CTCACCAA+CTAGGCAA"}
tgatagcagggctatcctgagccaaatccgtgttttgagaaaacaagggggttctcgaactagaatacaaaagaaaaggataggtgcagagactcaatggtgctatccctcggatcagggcaatccttagccaaatctttcattttttgaa
+
111>13@1111>11B1AF11BABC00B110BAFGGH0000DFAB//0///EEECGFA10AG1111D@@11100/0000/0F110B11@11/0>FC@1B>1B11FEFEC>E>///?<0110/?/FF<G22111@00@<GHHB>FHHH1///1

12
jupyterhub_volumes/web/obidoc/obitools/obigrep/start_t_rev_R1.fastq Normal file
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@@ -0,0 +1,12 @@
@M01334:147:000000000-LBRVD:1:1101:14968:1570 {"definition":"1:N:0:CTCACCAA+CTAGGCAA"}
tgttccacgggcaatcctgagccaaatctttcattttgaaaaaatgagagatataatgtatctcttatttattataagaaataaaatatttcttatctaatattaaagttaggtgcagagactcaatgggtggaactagatcggatgtgca
+
11>A>@3@A11>ACFFEG110BFB00BAFGHE2DFGG201110/B11111/D1D2222D2FDFDFGDGHHBGG2F222110D11@1D1FGHFHGFF@GE1F2FG22112B220F1@111/0>BF11B210B>//11B1<1BB<///<1122
@M01334:147:000000000-LBRVD:1:1101:15399:1590 {"definition":"1:N:0:CTCACCAA+CTAGGCAA"}
tgttccacccattgagtctctgcacctatctttaatattagataagaaatattttacttcttataataaataagagttattttatatctctcattttttcaaaatgaaagatttggctcaggattgcccgtggaactagatcggaagagca
+
11>A>@3B>>1CF111BBFAG3A3AAF1FFGHHF3FBGH221F211110D1DGHH2BBGBFF2F22D221D211111A2DDGG2F2FFFEGD1FFHHHGFD221B111110BFGD11F@1001BF0@@1/EA//1>F1B1FD/////00<1
@M01334:147:000000000-LBRVD:1:1101:13773:1687 {"definition":"1:N:0:CTCACCAA+CTAGGCAA"}
ctcggatcaccattgagtctctgcacctatctttaatattagataagaaaaaatattatttcttatctgaaataagaaatattttatatatttctttttctcaaaatgaaagatttggctcaggattgccctgatccgagggatagcacca
+
3AAAAAADFFFFGGGGFGGGGGHHHHHHFHHHHHHHHGHHHHGHGGHFFHHHCGFHHHHHHHHHHHHHGHHGGFHFFHHHGHHHHBHHHGHHHHHHHHHHHHHFFHHFBDFBCGHHF4BGHFGFFHHBDGFHHEHHFAAEECEGF3FDGFC

12
jupyterhub_volumes/web/obidoc/obitools/obigrep/start_t_rev_R2.fastq Normal file
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@@ -0,0 +1,12 @@
@M01334:147:000000000-LBRVD:1:1101:14968:1570 {"definition":"2:N:0:CTCACCAA+CTAGGCAA"}
ttttcctccctttttttctctgcacctttcttttttattagttttttattattttttttctttttttattttattgatactttatatctctctttttttcttttttattgatttttctctggttttcccttgttacttgttcttttttgct
+
11>>1131111BB111A0B3B313A0B1BAFGG11E/DG222B22///1D2DDGG1AE>>FG1D1/>/12B221212@21BFD2B2B2B2F11BFGHEEC1111B//1212BBF110@22111@@/2111?01111@111?111111--11
@M01334:147:000000000-LBRVD:1:1101:15399:1590 {"definition":"2:N:0:CTCACCAA+CTAGGCAA"}
ttttcctcgggctatcctgagccaaatctttccttttgaaaaatttagagatataaaatatctcttatttattttatgtagtattatatttcttatctaatattaaatttagttgctttttctcattttgttttactttttcttttttgct
+
11>>1131111111B11B1101A000B1DFF21DDFG1011100B122111D1D2221D1DADAFG1DGH2FG2D212222D2222D2DAF2FG2D@F21B2DE22122B221@11111110B222B222B00021B221B011111//11
@M01334:147:000000000-LBRVD:1:1101:13773:1687 {"definition":"2:N:0:CTCACCAA+CTAGGCAA"}
tgatagcagggctatcctgagccaaatccgtgttttgagaaaacaagggggttctcgaactagaatacaaaagaaaaggataggtgcagagactcaatggtgctatccctcggatcagggcaatccttagccaaatctttcattttttgaa
+
111>13@1111>11B1AF11BABC00B110BAFGGH0000DFAB//0///EEECGFA10AG1111D@@11100/0000/0F110B11@11/0>FC@1B>1B11FEFEC>E>///?<0110/?/FF<G22111@00@<GHHB>FHHH1///1

8
jupyterhub_volumes/web/obidoc/obitools/obigrep/start_t_xor_R1.fastq Normal file
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@@ -0,0 +1,8 @@
@M01334:147:000000000-LBRVD:1:1101:15946:1586 {"definition":"1:N:0:CTCACCAA+CTAGGCAA"}
tcctaaccccattgagtctctgcacctatctttaatattagataagaaatattttatttcttataataaataagagatattttatatctctcattttttcaaaatgaaagatttggctcaggattgcccacgtaacggagatcggaagagc
+
1>>A111>>>AFGGB1FFGFGFF3BBF1GGHHH33D2GH2B1D211110D1DGHHBFGGGGG2FA2F221F21A1F0D1DGHH2FAFFGFHFFGHHHHGG22@1BD111@0FFHE11GC1001BGF1B1B/EF00??////BF////<000
@M01334:147:000000000-LBRVD:1:1101:13773:1687 {"definition":"1:N:0:CTCACCAA+CTAGGCAA"}
ctcggatcaccattgagtctctgcacctatctttaatattagataagaaaaaatattatttcttatctgaaataagaaatattttatatatttctttttctcaaaatgaaagatttggctcaggattgccctgatccgagggatagcacca
+
3AAAAAADFFFFGGGGFGGGGGHHHHHHFHHHHHHHHGHHHHGHGGHFFHHHCGFHHHHHHHHHHHHHGHHGGFHFFHHHGHHHHBHHHGHHHHHHHHHHHHHFFHHFBDFBCGHHF4BGHFGFFHHBDGFHHEHHFAAEECEGF3FDGFC

8
jupyterhub_volumes/web/obidoc/obitools/obigrep/start_t_xor_R2.fastq Normal file
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@@ -0,0 +1,8 @@
@M01334:147:000000000-LBRVD:1:1101:15946:1586 {"definition":"2:N:0:CTCACCAA+CTAGGCAA"}
ccgttacgtgggcaatcctgagccaattctttctttttgaaaaaatgagagatataaaatatctcttatttattataagaaataaaatatttcttatctaatattaatgataggtgcagtgactctatggggttaggtagttcggatgagc
+
111>>111B111111BA0B1101B001BAGGH22DGGH?01110/B11111/D1D2221D1DBEDGH1GHH2GG2F222110D@111D1DFGEGFBG@GB1B2FG22222B220B11111111B@11B210/?E/00B211B2/////111
@M01334:147:000000000-LBRVD:1:1101:13773:1687 {"definition":"2:N:0:CTCACCAA+CTAGGCAA"}
tgatagcagggctatcctgagccaaatccgtgttttgagaaaacaagggggttctcgaactagaatacaaaagaaaaggataggtgcagagactcaatggtgctatccctcggatcagggcaatccttagccaaatctttcattttttgaa
+
111>13@1111>11B1AF11BABC00B110BAFGGH0000DFAB//0///EEECGFA10AG1111D@@11100/0000/0F110B11@11/0>FC@1B>1B11FEFEC>E>///?<0110/?/FF<G22111@00@<GHHB>FHHH1///1

6
jupyterhub_volumes/web/obidoc/obitools/obigrep/three_def.fasta Normal file
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@@ -0,0 +1,6 @@
>seqA1
cgatgctgcatgctagtgctagtcgat
>seqB1 my beautiful sequence
tagctagctagctagctagctagctagcta
>seqA2 {"count":10} my pretty sequence
gtagctagctagctagctagctagctaga