Add pedagogic content
Eric Coissac
@@ -2,9 +2,11 @@
|
||||
title: "Regular Expressions"
|
||||
format:
|
||||
revealjs:
|
||||
theme: beige # thème des slides
|
||||
css: ../../slides.css
|
||||
transition: fade # effet de transition entre les slides
|
||||
transition: slide
|
||||
scrollable: true
|
||||
theme: beige
|
||||
html-math-method: mathjax
|
||||
---
|
||||
|
||||
|
||||
|
Before Width: | Height: | Size: 9.6 KiB After Width: | Height: | Size: 9.6 KiB |
|
Before Width: | Height: | Size: 6.5 KiB After Width: | Height: | Size: 6.5 KiB |
|
Before Width: | Height: | Size: 146 KiB After Width: | Height: | Size: 146 KiB |
|
Before Width: | Height: | Size: 110 KiB After Width: | Height: | Size: 110 KiB |
|
Before Width: | Height: | Size: 2.5 KiB After Width: | Height: | Size: 2.5 KiB |
|
Before Width: | Height: | Size: 15 KiB After Width: | Height: | Size: 15 KiB |
|
Before Width: | Height: | Size: 15 KiB After Width: | Height: | Size: 15 KiB |
|
Before Width: | Height: | Size: 10 KiB After Width: | Height: | Size: 10 KiB |
|
Before Width: | Height: | Size: 13 KiB After Width: | Height: | Size: 13 KiB |
|
Before Width: | Height: | Size: 155 KiB After Width: | Height: | Size: 155 KiB |
|
Before Width: | Height: | Size: 15 KiB After Width: | Height: | Size: 15 KiB |
|
Before Width: | Height: | Size: 54 KiB After Width: | Height: | Size: 54 KiB |
|
Before Width: | Height: | Size: 29 KiB After Width: | Height: | Size: 29 KiB |
|
Before Width: | Height: | Size: 31 KiB After Width: | Height: | Size: 31 KiB |
|
Before Width: | Height: | Size: 23 KiB After Width: | Height: | Size: 23 KiB |
|
Before Width: | Height: | Size: 31 KiB After Width: | Height: | Size: 31 KiB |
|
Before Width: | Height: | Size: 4.6 KiB After Width: | Height: | Size: 4.6 KiB |
|
Before Width: | Height: | Size: 3.4 KiB After Width: | Height: | Size: 3.4 KiB |
|
Before Width: | Height: | Size: 2.9 KiB After Width: | Height: | Size: 2.9 KiB |
|
Before Width: | Height: | Size: 4.0 KiB After Width: | Height: | Size: 4.0 KiB |
|
Before Width: | Height: | Size: 4.4 KiB After Width: | Height: | Size: 4.4 KiB |
|
Before Width: | Height: | Size: 4.5 KiB After Width: | Height: | Size: 4.5 KiB |
|
Before Width: | Height: | Size: 4.5 KiB After Width: | Height: | Size: 4.5 KiB |
|
Before Width: | Height: | Size: 265 KiB After Width: | Height: | Size: 265 KiB |
|
Before Width: | Height: | Size: 198 KiB After Width: | Height: | Size: 198 KiB |
|
Before Width: | Height: | Size: 231 KiB After Width: | Height: | Size: 231 KiB |
|
Before Width: | Height: | Size: 18 KiB After Width: | Height: | Size: 18 KiB |
|
Before Width: | Height: | Size: 32 KiB After Width: | Height: | Size: 32 KiB |
|
Before Width: | Height: | Size: 5.3 KiB After Width: | Height: | Size: 5.3 KiB |
|
Before Width: | Height: | Size: 86 KiB After Width: | Height: | Size: 86 KiB |
|
Before Width: | Height: | Size: 13 KiB After Width: | Height: | Size: 13 KiB |
|
Before Width: | Height: | Size: 10 KiB After Width: | Height: | Size: 10 KiB |
|
Before Width: | Height: | Size: 13 KiB After Width: | Height: | Size: 13 KiB |
|
Before Width: | Height: | Size: 22 KiB After Width: | Height: | Size: 22 KiB |
|
Before Width: | Height: | Size: 4.4 KiB After Width: | Height: | Size: 4.4 KiB |
|
Before Width: | Height: | Size: 12 KiB After Width: | Height: | Size: 12 KiB |
@@ -6,12 +6,11 @@ title: |
|
||||
author: frederic.boyer@univ-grenoble-alpes.fr
|
||||
format:
|
||||
revealjs:
|
||||
theme: beige
|
||||
css: ../../slides.css
|
||||
transition: fade
|
||||
width: 1280
|
||||
height: 720
|
||||
center: true
|
||||
transition: slide
|
||||
scrollable: true
|
||||
theme: beige
|
||||
html-math-method: mathjax
|
||||
---
|
||||
|
||||
# Introduction to Unix
|
||||
1248
web_src/05_Lectures/05_Metabarcoding/Biodiversity_indices/Slides.qmd
Normal file
@@ -0,0 +1,167 @@
|
||||
<?xml version="1.0" encoding="UTF-8" standalone="no"?>
|
||||
<!DOCTYPE svg PUBLIC "-//W3C//DTD SVG 1.1//EN" "http://www.w3.org/Graphics/SVG/1.1/DTD/svg11.dtd">
|
||||
<svg width="100%" height="100%" viewBox="0 0 2031 2071" version="1.1" xmlns="http://www.w3.org/2000/svg" xmlns:xlink="http://www.w3.org/1999/xlink" xml:space="preserve" style="fill-rule:evenodd;clip-rule:evenodd;stroke-linecap:square;stroke-linejoin:round;stroke-miterlimit:1.41421;">
|
||||
<g transform="matrix(1,0,0,1,-192,-982)">
|
||||
<g id="Main-Plot">
|
||||
<g>
|
||||
<g id="Grille">
|
||||
<g transform="matrix(1.1808,0,0,1,-75.4118,0)">
|
||||
<g transform="matrix(1,0,0,1.31073,-19.234,-172.262)">
|
||||
<path d="M436.328,1027.97L1919.68,1027.97" style="fill:none;stroke-width:50.1px;stroke:rgb(181,181,181);"/>
|
||||
</g>
|
||||
<g transform="matrix(1,0,0,1.31073,-19.234,975.279)">
|
||||
<path d="M436.328,1027.97L1919.68,1027.97" style="fill:none;stroke-width:50.1px;stroke:rgb(181,181,181);"/>
|
||||
</g>
|
||||
<g transform="matrix(1,0,0,1.31073,-19.234,811.344)">
|
||||
<path d="M436.328,1027.97L1919.68,1027.97" style="fill:none;stroke-width:50.1px;stroke:rgb(181,181,181);"/>
|
||||
</g>
|
||||
<g transform="matrix(1,0,0,1.31073,-19.234,647.41)">
|
||||
<path d="M436.328,1027.97L1919.68,1027.97" style="fill:none;stroke-width:50.1px;stroke:rgb(181,181,181);"/>
|
||||
</g>
|
||||
<g transform="matrix(1,0,0,1.31073,-19.234,1303.15)">
|
||||
<path d="M436.328,1027.97L1919.68,1027.97" style="fill:none;stroke-width:50.1px;stroke:rgb(181,181,181);"/>
|
||||
</g>
|
||||
<g transform="matrix(1,0,0,1.31073,-19.234,319.541)">
|
||||
<path d="M436.328,1027.97L1919.68,1027.97" style="fill:none;stroke-width:50.1px;stroke:rgb(181,181,181);"/>
|
||||
</g>
|
||||
<g transform="matrix(1,0,0,1.31073,-19.234,155.607)">
|
||||
<path d="M436.328,1027.97L1919.68,1027.97" style="fill:none;stroke-width:50.1px;stroke:rgb(181,181,181);"/>
|
||||
</g>
|
||||
<g transform="matrix(1,0,0,1.31073,-19.234,-8.32717)">
|
||||
<path d="M436.328,1027.97L1919.68,1027.97" style="fill:none;stroke-width:50.1px;stroke:rgb(181,181,181);"/>
|
||||
</g>
|
||||
<g transform="matrix(1,0,0,1.31073,-19.234,1139.21)">
|
||||
<path d="M436.328,1027.97L1919.68,1027.97" style="fill:none;stroke-width:50.1px;stroke:rgb(181,181,181);"/>
|
||||
</g>
|
||||
<g transform="matrix(1,0,0,1.31073,-19.234,483.476)">
|
||||
<path d="M436.328,1027.97L1919.68,1027.97" style="fill:none;stroke-width:50.1px;stroke:rgb(181,181,181);"/>
|
||||
</g>
|
||||
</g>
|
||||
<g transform="matrix(3.34494e-16,1.1808,-1,2.83277e-16,3205.71,544.557)">
|
||||
<g transform="matrix(1,0,0,1.31073,-19.234,-172.262)">
|
||||
<path d="M436.328,1027.97L1919.68,1027.97" style="fill:none;stroke-width:50.1px;stroke:rgb(181,181,181);"/>
|
||||
</g>
|
||||
<g transform="matrix(1,0,0,1.31073,-19.234,975.279)">
|
||||
<path d="M436.328,1027.97L1919.68,1027.97" style="fill:none;stroke-width:50.1px;stroke:rgb(181,181,181);"/>
|
||||
</g>
|
||||
<g transform="matrix(1,0,0,1.31073,-19.234,811.344)">
|
||||
<path d="M436.328,1027.97L1919.68,1027.97" style="fill:none;stroke-width:50.1px;stroke:rgb(181,181,181);"/>
|
||||
</g>
|
||||
<g transform="matrix(1,0,0,1.31073,-19.234,647.41)">
|
||||
<path d="M436.328,1027.97L1919.68,1027.97" style="fill:none;stroke-width:50.1px;stroke:rgb(181,181,181);"/>
|
||||
</g>
|
||||
<g transform="matrix(1,0,0,1.31073,-19.234,1303.15)">
|
||||
<path d="M436.328,1027.97L1919.68,1027.97" style="fill:none;stroke-width:50.1px;stroke:rgb(181,181,181);"/>
|
||||
</g>
|
||||
<g transform="matrix(1,0,0,1.31073,-19.234,319.541)">
|
||||
<path d="M436.328,1027.97L1919.68,1027.97" style="fill:none;stroke-width:50.1px;stroke:rgb(181,181,181);"/>
|
||||
</g>
|
||||
<g transform="matrix(1,0,0,1.31073,-19.234,155.607)">
|
||||
<path d="M436.328,1027.97L1919.68,1027.97" style="fill:none;stroke-width:50.1px;stroke:rgb(181,181,181);"/>
|
||||
</g>
|
||||
<g transform="matrix(1,0,0,1.31073,-19.234,-8.32717)">
|
||||
<path d="M436.328,1027.97L1919.68,1027.97" style="fill:none;stroke-width:50.1px;stroke:rgb(181,181,181);"/>
|
||||
</g>
|
||||
<g transform="matrix(1,0,0,1.31073,-19.234,1139.21)">
|
||||
<path d="M436.328,1027.97L1919.68,1027.97" style="fill:none;stroke-width:50.1px;stroke:rgb(181,181,181);"/>
|
||||
</g>
|
||||
<g transform="matrix(1,0,0,1.31073,-19.234,483.476)">
|
||||
<path d="M436.328,1027.97L1919.68,1027.97" style="fill:none;stroke-width:50.1px;stroke:rgb(181,181,181);"/>
|
||||
</g>
|
||||
</g>
|
||||
</g>
|
||||
</g>
|
||||
<g id="Manhattan-distance">
|
||||
<g transform="matrix(1.01074,0,0,1.02216,-24.6851,-56.3204)">
|
||||
<clipPath id="_clip1">
|
||||
<path d="M1863.49,1501.96L718.479,1502.83L720.193,2321.91"/>
|
||||
</clipPath>
|
||||
<g clip-path="url(#_clip1)">
|
||||
<g transform="matrix(0.989373,0,0,0.978321,24.4228,55.0994)">
|
||||
<path d="M731.553,2320.07L1041.96,2321.26L1869.39,1502.84" style="fill:none;stroke-width:20.83px;stroke:rgb(239,159,75);"/>
|
||||
</g>
|
||||
</g>
|
||||
<path d="M1863.49,1501.96L718.479,1502.83L720.193,2321.91" style="fill:none;stroke-width:20.5px;stroke:rgb(239,159,75);"/>
|
||||
</g>
|
||||
<g transform="matrix(1,0,0,1,-8.23449,-149.065)">
|
||||
<path d="M745.363,2464.19L745.61,1981.62L894.445,1981.51L893.831,1816.25L1221.66,1817.42L1222.61,1674.94L1870.55,1673.53" style="fill:none;stroke-width:20.83px;stroke:rgb(239,159,75);"/>
|
||||
</g>
|
||||
</g>
|
||||
<g id="Euclidean-distance" transform="matrix(0.703395,-0.510486,0.510486,0.703395,-942.486,881.423)">
|
||||
<g transform="matrix(-1.21281,-1.91042e-15,-5.1683e-15,18.1142,3042.18,-42457.3)">
|
||||
<path d="M723.133,2480.78L2039.58,2480.04" style="fill:none;stroke-width:1.87px;stroke:rgb(31,146,28);"/>
|
||||
</g>
|
||||
<g transform="matrix(1.73227,-8.453e-16,7.24543e-16,1.73227,700.347,-1893.39)">
|
||||
<text x="183.268px" y="2487.83px" style="font-family:'ArialMT', 'Arial', sans-serif;font-size:50px;fill:black;">Euclidean distance</text>
|
||||
</g>
|
||||
<g transform="matrix(1.40197,1.01747,-1.01747,1.40197,3635.4,-1896.41)">
|
||||
<text x="183.268px" y="2487.83px" style="font-family:'ArialMT', 'Arial', sans-serif;font-size:50px;fill:black;">Manhattan distance</text>
|
||||
</g>
|
||||
<g transform="matrix(1.70572,-0.302138,0.302138,1.70572,92.3532,-1423.68)">
|
||||
<text x="183.268px" y="2487.83px" style="font-family:'ArialMT', 'Arial', sans-serif;font-size:50px;fill:black;">Chebyshev distance</text>
|
||||
</g>
|
||||
</g>
|
||||
<g transform="matrix(1,0,0,1,-7.03869,-1.75967)">
|
||||
<path d="M1869.12,1514.53L1052.81,2325.83L741.235,2322.67" style="fill:none;stroke-width:20.83px;stroke-linecap:butt;stroke:rgb(201,0,157);"/>
|
||||
</g>
|
||||
<g id="Point-B" transform="matrix(1,0,0,1,330.868,1784.29)">
|
||||
<g transform="matrix(1,0,0,1,2.98908,0)">
|
||||
<ellipse cx="381.618" cy="545.025" rx="28.788" ry="32.295" style="fill:rgb(235,235,235);stroke-width:62.5px;stroke:rgb(0,19,255);"/>
|
||||
</g>
|
||||
<g transform="matrix(2.92627,0,0,2.04123,-334.325,-1052.74)">
|
||||
<text x="229.007px" y="733.807px" style="font-family:'ArialMT', 'Arial', sans-serif;font-size:50px;fill:black;">A</text>
|
||||
</g>
|
||||
</g>
|
||||
<g id="Point-B1" transform="matrix(1,0,0,1,1080.14,962.633)">
|
||||
<g transform="matrix(1,0,0,1,402.614,0)">
|
||||
<ellipse cx="381.618" cy="545.025" rx="28.788" ry="32.295" style="fill:rgb(235,235,235);stroke-width:62.5px;stroke:rgb(255,0,6);"/>
|
||||
</g>
|
||||
<g transform="matrix(2.92627,0,0,2.04123,65.3005,-1052.74)">
|
||||
<text x="229.007px" y="733.807px" style="font-family:'ArialMT', 'Arial', sans-serif;font-size:50px;fill:black;">B</text>
|
||||
</g>
|
||||
</g>
|
||||
<g id="Coordinates">
|
||||
<g id="B">
|
||||
<g id="Xb">
|
||||
<g id="Xb1" transform="matrix(1.40046e-16,-2.28712,1,6.12323e-17,-458.914,3473.11)">
|
||||
<path d="M254.53,2321.59L898.365,2321.59" style="fill:none;stroke-width:5.9px;stroke-linecap:butt;stroke-dasharray:5.9,5.9,5.9,0;stroke:black;"/>
|
||||
</g>
|
||||
<g transform="matrix(20.9725,0,1.97215e-31,20.9725,-12015.1,-59666.6)">
|
||||
<text x="658.77px" y="2988.33px" style="font-family:'ArialMT', 'Arial', sans-serif;font-size:6.548px;fill:black;">x</text>
|
||||
<text x="662.044px" y="2990.51px" style="font-family:'ArialMT', 'Arial', sans-serif;font-size:3.817px;fill:black;">B</text>
|
||||
</g>
|
||||
</g>
|
||||
<g id="Yb">
|
||||
<g id="Yb1" transform="matrix(2.53289,0,0,0.949467,-314.832,-697.08)">
|
||||
<path d="M254.53,2321.59L898.365,2321.59" style="fill:none;stroke-width:5.45px;stroke-linecap:butt;stroke-dasharray:5.45,5.45,5.45,0;stroke:black;"/>
|
||||
</g>
|
||||
<g transform="matrix(20.9725,0,1.97215e-31,20.9725,-13626.2,-61124.7)">
|
||||
<text x="658.77px" y="2988.33px" style="font-family:'ArialMT', 'Arial', sans-serif;font-size:6.548px;fill:black;">y</text>
|
||||
<text x="662.044px" y="2990.51px" style="font-family:'ArialMT', 'Arial', sans-serif;font-size:3.817px;fill:black;">B</text>
|
||||
</g>
|
||||
</g>
|
||||
</g>
|
||||
<g id="A">
|
||||
<g id="Ya">
|
||||
<g id="Ya1" transform="matrix(0.865442,-6.16298e-33,0,1,109.585,4.54747e-13)">
|
||||
<path d="M254.53,2321.59L898.365,2321.59" style="fill:none;stroke-width:11.14px;stroke-linecap:butt;stroke-dasharray:11.14,11.14,11.14,0;stroke:black;"/>
|
||||
</g>
|
||||
<g transform="matrix(20.9725,0,0,20.9725,-13626.2,-60326.8)">
|
||||
<text x="658.77px" y="2988.33px" style="font-family:'ArialMT', 'Arial', sans-serif;font-size:6.548px;fill:black;">y</text>
|
||||
<text x="662.044px" y="2990.51px" style="font-family:'ArialMT', 'Arial', sans-serif;font-size:3.817px;fill:black;">A</text>
|
||||
</g>
|
||||
</g>
|
||||
<g id="Xa">
|
||||
<g id="Xa1" transform="matrix(6.08856e-17,-0.994338,1,6.12323e-17,-1605.05,3144.05)">
|
||||
<path d="M254.53,2321.59L898.365,2321.59" style="fill:black;stroke-width:10.45px;stroke-linecap:butt;stroke-dasharray:10.45,10.45,10.45,0;stroke:black;"/>
|
||||
</g>
|
||||
<g transform="matrix(20.9725,0,0,20.9725,-13160.4,-59666.6)">
|
||||
<text x="658.77px" y="2988.33px" style="font-family:'ArialMT', 'Arial', sans-serif;font-size:6.548px;fill:black;">x</text>
|
||||
<text x="662.044px" y="2990.51px" style="font-family:'ArialMT', 'Arial', sans-serif;font-size:3.817px;fill:black;">A</text>
|
||||
</g>
|
||||
</g>
|
||||
</g>
|
||||
</g>
|
||||
</g>
|
||||
</g>
|
||||
</svg>
|
||||
|
After Width: | Height: | Size: 12 KiB |
@@ -0,0 +1,108 @@
|
||||
<?xml version="1.0" encoding="UTF-8" standalone="no"?>
|
||||
<!DOCTYPE svg PUBLIC "-//W3C//DTD SVG 1.1//EN" "http://www.w3.org/Graphics/SVG/1.1/DTD/svg11.dtd">
|
||||
<svg width="100%" height="100%" viewBox="0 0 2021 852" version="1.1" xmlns="http://www.w3.org/2000/svg" xmlns:xlink="http://www.w3.org/1999/xlink" xml:space="preserve" style="fill-rule:evenodd;clip-rule:evenodd;stroke-linecap:round;stroke-linejoin:round;stroke-miterlimit:1.41421;">
|
||||
<g transform="matrix(1,0,0,1,-187,-683)">
|
||||
<g>
|
||||
<g>
|
||||
<g transform="matrix(0.824429,0,0,0.824429,40.8885,111.226)">
|
||||
<rect x="195.263" y="711.481" width="997.627" height="997.627" style="fill:rgb(235,235,235);stroke-width:20.22px;stroke:black;"/>
|
||||
</g>
|
||||
<g>
|
||||
<g transform="matrix(1,0,0,1,324.539,-65.9235)">
|
||||
<ellipse cx="477.16" cy="995.163" rx="110.023" ry="109.093" style="fill:rgb(248,0,230);"/>
|
||||
</g>
|
||||
<g transform="matrix(1.76539,0,0,1.76539,-62.3224,-805.515)">
|
||||
<text x="472.748px" y="995.259px" style="font-family:'ArialMT', 'Arial', sans-serif;font-size:50px;fill:black;">B</text>
|
||||
</g>
|
||||
</g>
|
||||
<g>
|
||||
<ellipse cx="477.16" cy="995.163" rx="110.023" ry="109.093" style="fill:rgb(82,110,255);"/>
|
||||
<g transform="matrix(1.76539,0,0,1.76539,-386.861,-739.592)">
|
||||
<text x="472.748px" y="995.259px" style="font-family:'ArialMT', 'Arial', sans-serif;font-size:50px;fill:black;">A</text>
|
||||
</g>
|
||||
</g>
|
||||
<g>
|
||||
<g transform="matrix(1,0,0,1,291.652,223.089)">
|
||||
<ellipse cx="477.16" cy="995.163" rx="110.023" ry="109.093" style="fill:rgb(109,255,87);"/>
|
||||
</g>
|
||||
<g transform="matrix(1.76539,0,0,1.76539,-97.6439,-516.503)">
|
||||
<text x="472.748px" y="995.259px" style="font-family:'ArialMT', 'Arial', sans-serif;font-size:50px;fill:black;">D</text>
|
||||
</g>
|
||||
</g>
|
||||
<g transform="matrix(1,0,0,1,-17.2537,10.505)">
|
||||
<text x="245.684px" y="752.356px" style="font-family:'ArialMT', 'Arial', sans-serif;font-size:50px;fill:black;">Environment 1</text>
|
||||
</g>
|
||||
<g>
|
||||
<g transform="matrix(1,0,0,1,-9.40327,285.266)">
|
||||
<ellipse cx="477.16" cy="995.163" rx="110.023" ry="109.093" style="fill:rgb(255,255,49);"/>
|
||||
</g>
|
||||
<g transform="matrix(1.76539,0,0,1.76539,-398.699,-454.326)">
|
||||
<text x="472.748px" y="995.259px" style="font-family:'ArialMT', 'Arial', sans-serif;font-size:50px;fill:black;">C</text>
|
||||
</g>
|
||||
</g>
|
||||
</g>
|
||||
<g>
|
||||
<g transform="matrix(0.824429,0,0,0.824429,1209.24,111.226)">
|
||||
<rect x="195.263" y="711.481" width="997.627" height="997.627" style="fill:rgb(235,235,235);stroke-width:20.22px;stroke:black;"/>
|
||||
</g>
|
||||
<g transform="matrix(0.333632,0,0,0.333632,1745.99,939.675)">
|
||||
<g transform="matrix(1,0,0,1,324.539,-65.9235)">
|
||||
<ellipse cx="477.16" cy="995.163" rx="110.023" ry="109.093" style="fill:rgb(80,254,255);"/>
|
||||
</g>
|
||||
<g transform="matrix(1.76539,0,0,1.76539,-62.3224,-805.515)">
|
||||
<text x="472.748px" y="995.259px" style="font-family:'ArialMT', 'Arial', sans-serif;font-size:50px;fill:black;">G</text>
|
||||
</g>
|
||||
</g>
|
||||
<g transform="matrix(1,0,0,1,1165.64,10.505)">
|
||||
<text x="245.684px" y="752.356px" style="font-family:'ArialMT', 'Arial', sans-serif;font-size:50px;fill:black;">Environment 2</text>
|
||||
</g>
|
||||
<g transform="matrix(0.333632,0,0,0.333632,1563.39,529.401)">
|
||||
<g transform="matrix(1,0,0,1,324.539,-65.9235)">
|
||||
<ellipse cx="477.16" cy="995.163" rx="110.023" ry="109.093" style="fill:rgb(248,0,230);"/>
|
||||
</g>
|
||||
<g transform="matrix(1.76539,0,0,1.76539,-62.3224,-805.515)">
|
||||
<text x="472.748px" y="995.259px" style="font-family:'ArialMT', 'Arial', sans-serif;font-size:50px;fill:black;">B</text>
|
||||
</g>
|
||||
</g>
|
||||
<g transform="matrix(0.333632,0,0,0.333632,1745.51,807.014)">
|
||||
<g transform="matrix(1,0,0,1,324.539,-65.9235)">
|
||||
<ellipse cx="477.16" cy="995.163" rx="110.023" ry="109.093" style="fill:rgb(255,201,226);"/>
|
||||
</g>
|
||||
<g transform="matrix(1.76539,0,0,1.76539,-62.3224,-805.515)">
|
||||
<text x="472.748px" y="995.259px" style="font-family:'ArialMT', 'Arial', sans-serif;font-size:50px;fill:black;">F</text>
|
||||
</g>
|
||||
</g>
|
||||
<g transform="matrix(0.333632,0,0,0.333632,1711.84,590.465)">
|
||||
<g transform="matrix(1,0,0,1,324.539,-65.9235)">
|
||||
<ellipse cx="477.16" cy="995.163" rx="110.023" ry="109.093" style="fill:rgb(255,95,111);"/>
|
||||
</g>
|
||||
<g transform="matrix(1.76539,0,0,1.76539,-62.3224,-805.515)">
|
||||
<text x="472.748px" y="995.259px" style="font-family:'ArialMT', 'Arial', sans-serif;font-size:50px;fill:black;">E</text>
|
||||
</g>
|
||||
</g>
|
||||
<g transform="matrix(1.74862,0,0,1.74862,827.639,-680.448)">
|
||||
<ellipse cx="477.16" cy="995.163" rx="110.023" ry="109.093" style="fill:rgb(82,110,255);"/>
|
||||
<g transform="matrix(1.76539,0,0,1.76539,-386.861,-739.592)">
|
||||
<text x="472.748px" y="995.259px" style="font-family:'ArialMT', 'Arial', sans-serif;font-size:50px;fill:black;">A</text>
|
||||
</g>
|
||||
</g>
|
||||
<g transform="matrix(0.468295,0,0,0.468295,1493.29,758.779)">
|
||||
<g transform="matrix(1,0,0,1,291.652,223.089)">
|
||||
<ellipse cx="477.16" cy="995.163" rx="110.023" ry="109.093" style="fill:rgb(109,255,87);"/>
|
||||
</g>
|
||||
<g transform="matrix(1.76539,0,0,1.76539,-97.6439,-516.503)">
|
||||
<text x="472.748px" y="995.259px" style="font-family:'ArialMT', 'Arial', sans-serif;font-size:50px;fill:black;">D</text>
|
||||
</g>
|
||||
</g>
|
||||
<g transform="matrix(0.311548,0,0,0.311548,1336.31,890.508)">
|
||||
<g transform="matrix(1,0,0,1,-9.40327,285.266)">
|
||||
<ellipse cx="477.16" cy="995.163" rx="110.023" ry="109.093" style="fill:rgb(255,255,49);"/>
|
||||
</g>
|
||||
<g transform="matrix(1.76539,0,0,1.76539,-398.699,-454.326)">
|
||||
<text x="472.748px" y="995.259px" style="font-family:'ArialMT', 'Arial', sans-serif;font-size:50px;fill:black;">C</text>
|
||||
</g>
|
||||
</g>
|
||||
</g>
|
||||
</g>
|
||||
</g>
|
||||
</svg>
|
||||
|
After Width: | Height: | Size: 7.1 KiB |
@@ -0,0 +1,66 @@
|
||||
<?xml version="1.0" encoding="UTF-8" standalone="no"?>
|
||||
<!DOCTYPE svg PUBLIC "-//W3C//DTD SVG 1.1//EN" "http://www.w3.org/Graphics/SVG/1.1/DTD/svg11.dtd">
|
||||
<svg width="100%" height="100%" viewBox="0 0 1846 1637" version="1.1" xmlns="http://www.w3.org/2000/svg" xmlns:xlink="http://www.w3.org/1999/xlink" xml:space="preserve" style="fill-rule:evenodd;clip-rule:evenodd;stroke-linecap:round;stroke-linejoin:round;stroke-miterlimit:1.41421;">
|
||||
<g transform="matrix(1,0,0,1,-105,-316)">
|
||||
<g>
|
||||
<g>
|
||||
<g transform="matrix(3.56657,0,0,3.42572,-1715.29,-1858.59)">
|
||||
<ellipse cx="815.464" cy="910.747" rx="208.192" ry="186.092" style="fill:rgb(235,235,235);stroke-width:4.77px;stroke:black;"/>
|
||||
</g>
|
||||
<g transform="matrix(2.37512,0,0,2.37512,-1050.26,-4483.8)">
|
||||
<text x="805.445px" y="2617.15px" style="font-family:'ArialMT', 'Arial', sans-serif;font-size:50px;fill:black;">Environment</text>
|
||||
</g>
|
||||
</g>
|
||||
<g>
|
||||
<g transform="matrix(0.875323,0,0,0.814584,53.5525,-933.789)">
|
||||
<ellipse cx="826.904" cy="2457.22" rx="238.262" ry="246.522" style="fill:rgb(142,255,140);stroke-width:19.71px;stroke:black;"/>
|
||||
</g>
|
||||
<g transform="matrix(2.01739,0,0,2.01739,-329.967,-4026.53)">
|
||||
<text x="483.571px" y="2537.83px" style="font-family:'ArialMT', 'Arial', sans-serif;font-size:50px;fill:black;">Site <tspan x="580.861px " y="2537.83px ">A</tspan></text>
|
||||
</g>
|
||||
</g>
|
||||
<g>
|
||||
<g transform="matrix(0.875323,0,0,0.814584,495.154,-585.114)">
|
||||
<ellipse cx="826.904" cy="2457.22" rx="238.262" ry="246.522" style="fill:rgb(255,178,148);stroke-width:19.71px;stroke:black;"/>
|
||||
</g>
|
||||
<g transform="matrix(2.01739,0,0,2.01739,126.222,-3672.28)">
|
||||
<text x="483.571px" y="2537.83px" style="font-family:'ArialMT', 'Arial', sans-serif;font-size:50px;fill:black;">Site B</text>
|
||||
</g>
|
||||
</g>
|
||||
<g>
|
||||
<g transform="matrix(0.875323,0,0,0.814584,875.962,-933.789)">
|
||||
<ellipse cx="826.904" cy="2457.22" rx="238.262" ry="246.522" style="fill:rgb(252,255,142);stroke-width:19.71px;stroke:black;"/>
|
||||
</g>
|
||||
<g transform="matrix(2.01739,0,0,2.01739,486.877,-4026.53)">
|
||||
<text x="483.571px" y="2537.83px" style="font-family:'ArialMT', 'Arial', sans-serif;font-size:50px;fill:black;">Site C</text>
|
||||
</g>
|
||||
</g>
|
||||
<g transform="matrix(1.90555,0,0,1.90555,-1159.48,-204.501)">
|
||||
<text x="1107.37px" y="318.159px" style="font-family:'STIXGeneral-Regular', 'STIXGeneral';font-size:65.598px;fill:black;">𝛂-div<tspan x="1253.72px " y="318.159px ">e</tspan>rsity</text>
|
||||
</g>
|
||||
<g transform="matrix(1.90555,0,0,1.90555,-2008.56,1318.74)">
|
||||
<text x="1107.37px" y="318.159px" style="font-family:'STIXGeneral-Italic', 'STIXGeneral';font-style:italic;font-size:65.598px;fill:black;">𝛾</text>
|
||||
<text x="1135.45px" y="318.159px" style="font-family:'STIXGeneral-Regular', 'STIXGeneral';font-size:65.598px;fill:black;">-div<tspan x="1239.55px " y="318.159px ">e</tspan>rsity</text>
|
||||
</g>
|
||||
<g transform="matrix(1.90555,0,0,1.90555,-1535.83,762.329)">
|
||||
<text x="1107.37px" y="318.159px" style="font-family:'STIXGeneral-Italic', 'STIXGeneral';font-style:italic;font-size:50px;fill:black;">𝛽</text>
|
||||
<text x="1132.02px" y="318.159px" style="font-family:'STIXGeneral-Regular', 'STIXGeneral';font-size:50px;fill:black;">-div<tspan x="1211.37px " y="318.159px ">e</tspan>rsity</text>
|
||||
</g>
|
||||
<g transform="matrix(-2.57949e-16,1.40421,-7.56783,-1.39019e-15,3559.03,56.614)">
|
||||
<path d="M287.175,308.403L287.175,306.419L860.49,306.419L860.49,303.444L913.72,307.411L860.49,311.379L860.49,308.403L287.175,308.403Z" style="fill:black;stroke-width:0.69px;stroke:black;"/>
|
||||
</g>
|
||||
<g transform="matrix(-0.612613,0.844268,-6.71099,-4.86959,3409.58,1712.57)">
|
||||
<path d="M287.175,308.403L287.175,306.419L835.211,306.419L835.211,303.444L913.72,307.411L835.211,311.379L835.211,308.403L287.175,308.403Z" style="fill:black;stroke-width:0.63px;stroke:black;"/>
|
||||
</g>
|
||||
<g transform="matrix(0.251261,-0.311578,5.89101,4.75059,-1333.11,417.689)">
|
||||
<path d="M287.175,308.403L287.175,306.419L726.98,306.419L726.98,303.444L913.72,307.411L726.98,311.379L726.98,308.403L287.175,308.403Z" style="fill:black;stroke-width:0.7px;stroke:black;"/>
|
||||
</g>
|
||||
<g transform="matrix(0.437815,0.363403,-4.83348,5.8232,2225.37,-773.088)">
|
||||
<path d="M418.542,308.403L418.542,311.379L287.175,307.411L418.542,303.444L418.542,306.419L782.353,306.419L782.353,303.444L913.72,307.411L782.353,311.379L782.353,308.403L418.542,308.403Z" style="fill:black;stroke-width:0.7px;stroke:black;"/>
|
||||
</g>
|
||||
<g transform="matrix(0.345195,0.841982,-6.44148,2.64087,3196.59,-594.14)">
|
||||
<path d="M287.175,308.403L287.175,306.419L838.159,306.419L838.159,303.444L913.72,307.411L838.159,311.379L838.159,308.403L287.175,308.403Z" style="fill:black;stroke-width:0.76px;stroke:black;"/>
|
||||
</g>
|
||||
</g>
|
||||
</g>
|
||||
</svg>
|
||||
|
After Width: | Height: | Size: 5.4 KiB |
@@ -0,0 +1,34 @@
|
||||
<?xml version="1.0" encoding="UTF-8" standalone="no"?>
|
||||
<!DOCTYPE svg PUBLIC "-//W3C//DTD SVG 1.1//EN" "http://www.w3.org/Graphics/SVG/1.1/DTD/svg11.dtd">
|
||||
<svg width="100%" height="100%" viewBox="0 0 1502 1501" version="1.1" xmlns="http://www.w3.org/2000/svg" xmlns:xlink="http://www.w3.org/1999/xlink" xml:space="preserve" style="fill-rule:evenodd;clip-rule:evenodd;stroke-linecap:round;stroke-linejoin:round;stroke-miterlimit:1.41421;">
|
||||
<g transform="matrix(1,0,0,1,-380,-775)">
|
||||
<g transform="matrix(1,0,0,1.48478,0,-917.84)">
|
||||
<path d="M775.395,1921.11L775.395,1913.9L1685.12,1913.9L1685.12,1893.32L1756.93,1917.5L1685.12,1941.69L1685.12,1921.11L775.395,1921.11Z" style="fill:rgb(0,1,2);"/>
|
||||
</g>
|
||||
<g transform="matrix(0.605804,-0.795614,1.18131,0.899484,-1951.37,817.912)">
|
||||
<path d="M775.395,1921.11L775.395,1913.9L1685.12,1913.9L1685.12,1893.32L1756.93,1917.5L1685.12,1941.69L1685.12,1921.11L775.395,1921.11Z" style="fill:rgb(0,1,2);"/>
|
||||
</g>
|
||||
<g transform="matrix(3.8068,0,0,3.89337,-3178.36,-6714.08)">
|
||||
<circle cx="1035.39" cy="2222.51" r="260.137" style="fill:none;stroke-width:0.87px;stroke-dasharray:0.87,3.46,0.87,0;stroke:black;"/>
|
||||
</g>
|
||||
<path d="M2051.47,1936.49L526.666,1926.49" style="fill:none;stroke-width:3.33px;stroke-dasharray:3.33,13.33,3.33,0;stroke:black;"/>
|
||||
<g transform="matrix(6.12323e-17,-1,1,6.12323e-17,-1146.44,2711.11)">
|
||||
<path d="M2051.47,1936.49L526.666,1926.49" style="fill:none;stroke-width:3.33px;stroke-dasharray:3.33,13.33,3.33,0;stroke:black;"/>
|
||||
</g>
|
||||
<path d="M1378.06,1143.23L1754.19,1928.24" style="fill:none;stroke-width:8.33px;stroke:rgb(253,36,0);"/>
|
||||
<g transform="matrix(6.12323e-17,-1,1,6.12323e-17,-359.004,3304.88)">
|
||||
<path d="M1378.06,1143.23L1754.19,1928.24" style="fill:none;stroke-width:8.33px;stroke-dasharray:8.33,33.33,8.33,0;stroke:rgb(253,36,0);"/>
|
||||
</g>
|
||||
<g transform="matrix(-3.81475e-16,-2.37218,2.37218,-3.81475e-16,-3006.71,2967.43)">
|
||||
<path d="M437.279,1709.62C472.759,1709.62 506.172,1692.93 527.486,1664.57L437.279,1596.78L437.279,1709.62Z" style="fill:none;stroke-width:3.51px;stroke-dasharray:3.51,14.05,3.51,0;stroke:black;"/>
|
||||
</g>
|
||||
<g transform="matrix(1,0,0,1,-11.9118,184.176)">
|
||||
<text x="1089.21px" y="1669.29px" style="font-family:'ArialMT', 'Arial', sans-serif;font-size:50px;fill:black;">cos(</text>
|
||||
<text x="1183.67px" y="1669.29px" style="font-family:'STIXGeneral-Regular', 'STIXGeneral';font-size:50px;fill:black;">𝛼</text>
|
||||
<text x="1209.87px" y="1669.29px" style="font-family:'ArialMT', 'Arial', sans-serif;font-size:50px;fill:black;">)=R</text>
|
||||
</g>
|
||||
<g transform="matrix(2.44125,0,0,1.95351,-2681.3,-1267.15)">
|
||||
<text x="1776.48px" y="1492.45px" style="font-family:'ArialMT', 'Arial', sans-serif;font-size:50px;fill:rgb(255,76,31);">d</text>
|
||||
</g>
|
||||
</g>
|
||||
</svg>
|
||||
|
After Width: | Height: | Size: 2.9 KiB |
@@ -0,0 +1,32 @@
|
||||
<?xml version="1.0" encoding="UTF-8" standalone="no"?>
|
||||
<!DOCTYPE svg PUBLIC "-//W3C//DTD SVG 1.1//EN" "http://www.w3.org/Graphics/SVG/1.1/DTD/svg11.dtd">
|
||||
<svg width="100%" height="100%" viewBox="0 0 1267 936" version="1.1" xmlns="http://www.w3.org/2000/svg" xmlns:xlink="http://www.w3.org/1999/xlink" xml:space="preserve" style="fill-rule:evenodd;clip-rule:evenodd;stroke-linecap:round;stroke-linejoin:round;stroke-miterlimit:1.41421;">
|
||||
<g transform="matrix(1,0,0,1,-473,-887)">
|
||||
<g id="metric" transform="matrix(1,0,0,1,85.1006,-84.2667)">
|
||||
<g transform="matrix(1,0,0,1,0.196399,0)">
|
||||
<path d="M520.389,1821.09L1554.35,1821.09" style="fill:none;stroke-width:1px;stroke:black;"/>
|
||||
</g>
|
||||
<g transform="matrix(6.12323e-17,-1,-1,-6.12323e-17,2858.39,2245.09)">
|
||||
<path d="M1137.81,2034.33L423.607,2337.94L423.239,1303.71L1137.81,2034.33Z" style="fill:none;stroke-width:1px;stroke:black;"/>
|
||||
</g>
|
||||
<g transform="matrix(2.46916,0,0,2.46916,-1742.45,-175.128)">
|
||||
<text x="1022.83px" y="500.74px" style="font-family:'ArialMT', 'Arial', sans-serif;font-size:50px;fill:black;">C</text>
|
||||
</g>
|
||||
<g transform="matrix(2.46916,0,0,2.46916,-2137.03,670.818)">
|
||||
<text x="1022.83px" y="500.74px" style="font-family:'ArialMT', 'Arial', sans-serif;font-size:50px;fill:black;">A</text>
|
||||
</g>
|
||||
<g transform="matrix(2.46916,0,0,2.46916,-946.651,670.818)">
|
||||
<text x="1022.83px" y="500.74px" style="font-family:'ArialMT', 'Arial', sans-serif;font-size:50px;fill:black;">B</text>
|
||||
</g>
|
||||
<g transform="matrix(1,0,0,1,19.4596,34.2956)">
|
||||
<circle cx="505.904" cy="1785.24" r="15.508" style="fill:rgb(255,120,60);stroke-width:3.33px;stroke:black;"/>
|
||||
</g>
|
||||
<g transform="matrix(1,0,0,1,1044.28,33.9027)">
|
||||
<circle cx="505.904" cy="1785.24" r="15.508" style="fill:rgb(255,120,60);stroke-width:3.33px;stroke:black;"/>
|
||||
</g>
|
||||
<g transform="matrix(1,0,0,1,319.278,-679.347)">
|
||||
<circle cx="505.904" cy="1785.24" r="15.508" style="fill:rgb(255,120,60);stroke-width:3.33px;stroke:black;"/>
|
||||
</g>
|
||||
</g>
|
||||
</g>
|
||||
</svg>
|
||||
|
After Width: | Height: | Size: 2.2 KiB |
|
After Width: | Height: | Size: 408 KiB |
@@ -0,0 +1,44 @@
|
||||
<?xml version="1.0" encoding="UTF-8" standalone="no"?>
|
||||
<!DOCTYPE svg PUBLIC "-//W3C//DTD SVG 1.1//EN" "http://www.w3.org/Graphics/SVG/1.1/DTD/svg11.dtd">
|
||||
<svg width="100%" height="100%" viewBox="0 0 1267 1445" version="1.1" xmlns="http://www.w3.org/2000/svg" xmlns:xlink="http://www.w3.org/1999/xlink" xml:space="preserve" style="fill-rule:evenodd;clip-rule:evenodd;stroke-linecap:round;stroke-linejoin:round;stroke-miterlimit:1.41421;">
|
||||
<g transform="matrix(1,0,0,1,-388,-463)">
|
||||
<g id="Umtrametric">
|
||||
<g transform="matrix(1,0,0,1,0.196399,0)">
|
||||
<path d="M520.389,1821.09L1554.35,1821.09" style="fill:none;stroke-width:1px;stroke:black;"/>
|
||||
</g>
|
||||
<g transform="matrix(6.12323e-17,-1,-1,-6.12323e-17,2858.39,2245.09)">
|
||||
<path d="M1554.35,1821.09L423.607,2337.94L423.239,1303.71L1554.31,1821" style="fill:none;stroke-width:1px;stroke:black;"/>
|
||||
</g>
|
||||
<g transform="matrix(2.46916,0,0,2.46916,-1532.55,-683.049)">
|
||||
<text x="1022.83px" y="500.74px" style="font-family:'ArialMT', 'Arial', sans-serif;font-size:50px;fill:black;">C</text>
|
||||
</g>
|
||||
<g transform="matrix(2.46916,0,0,2.46916,-2137.03,670.818)">
|
||||
<text x="1022.83px" y="500.74px" style="font-family:'ArialMT', 'Arial', sans-serif;font-size:50px;fill:black;">A</text>
|
||||
</g>
|
||||
<g transform="matrix(2.46916,0,0,2.46916,-946.651,670.818)">
|
||||
<text x="1022.83px" y="500.74px" style="font-family:'ArialMT', 'Arial', sans-serif;font-size:50px;fill:black;">B</text>
|
||||
</g>
|
||||
<g transform="matrix(1,0,0,1,19.4596,34.2956)">
|
||||
<circle cx="505.904" cy="1785.24" r="15.508" style="fill:rgb(255,120,60);stroke-width:3.33px;stroke:black;"/>
|
||||
</g>
|
||||
<g transform="matrix(1,0,0,1,1044.28,33.9027)">
|
||||
<circle cx="505.904" cy="1785.24" r="15.508" style="fill:rgb(255,120,60);stroke-width:3.33px;stroke:black;"/>
|
||||
</g>
|
||||
<g transform="matrix(1,0,0,1,529.835,-1093.64)">
|
||||
<circle cx="505.904" cy="1785.24" r="15.508" style="fill:rgb(255,120,60);stroke-width:3.33px;stroke:black;"/>
|
||||
</g>
|
||||
<g>
|
||||
<path d="M740.104,1216.22L832.267,1257.12" style="fill:none;stroke-width:3.33px;stroke:black;"/>
|
||||
<g transform="matrix(1,0,0,1,7,-17)">
|
||||
<path d="M740.104,1216.22L832.267,1257.12" style="fill:none;stroke-width:3.33px;stroke:black;"/>
|
||||
</g>
|
||||
</g>
|
||||
<g transform="matrix(-1,0,0,1,2071.79,-0.155385)">
|
||||
<path d="M740.104,1216.22L832.267,1257.12" style="fill:none;stroke-width:3.33px;stroke:black;"/>
|
||||
<g transform="matrix(1,0,0,1,7,-17)">
|
||||
<path d="M740.104,1216.22L832.267,1257.12" style="fill:none;stroke-width:3.33px;stroke:black;"/>
|
||||
</g>
|
||||
</g>
|
||||
</g>
|
||||
</g>
|
||||
</svg>
|
||||
|
After Width: | Height: | Size: 2.9 KiB |
@@ -0,0 +1,60 @@
|
||||
%% This BibTeX bibliography file was created using BibDesk.
|
||||
%% http://bibdesk.sourceforge.net/
|
||||
|
||||
|
||||
%% Created for Eric Coissac at 2018-10-18 14:52:51 +0200
|
||||
|
||||
|
||||
%% Saved with string encoding Unicode (UTF-8)
|
||||
|
||||
|
||||
|
||||
@article{Tsallis:94:00,
|
||||
Author = {Tsallis, Constantino},
|
||||
Date-Added = {2018-10-18 14:52:41 +0200},
|
||||
Date-Modified = {2018-10-18 14:52:49 +0200},
|
||||
Journal = {Quim. Nova},
|
||||
Number = 6,
|
||||
Pages = {468--471},
|
||||
Title = {What are the numbers that experiments provide},
|
||||
Volume = 17,
|
||||
Year = 1994}
|
||||
|
||||
|
||||
@ARTICLE{Whittaker:10:00,
|
||||
title = "Meta-analyses and mega-mistakes: calling time on meta-analysis
|
||||
of the species richness-productivity relationship",
|
||||
author = "Whittaker, Robert J",
|
||||
abstract = "The form of the species richness-productivity relationship
|
||||
(SRPR) is both theoretically important and contentious. In an
|
||||
effort to distill general patterns, ecologists have undertaken
|
||||
meta-analyses, within which each SRPR data set is first
|
||||
classified into one of five alternative forms: positive, humped
|
||||
(unimodal), negative, U-shaped (unimodal), and no relationship.
|
||||
Herein, I first provide a critique of this approach, based on 68
|
||||
plant data sets/ studies used in three meta-analyses published
|
||||
in Ecology. The meta-analyses are shown to have resulted in
|
||||
highly divergent outcomes, inconsistent and often highly
|
||||
inappropriate classification of data sets, and the introduction
|
||||
and multiplication of errors from one meta-analysis to the next.
|
||||
I therefore call on the ecological community at large to adopt a
|
||||
far more rigorous and critical attitude to the use of
|
||||
meta-analysis. Second, I develop the argument that the
|
||||
literature on the SRPR continues to be bedeviled by a common
|
||||
failing to appreciate the fundamental importance of the scale of
|
||||
analysis, beginning with the confusion evident between concepts
|
||||
of grain, focus, and extent. I postulate that variation in the
|
||||
form of the SRPR at fine scales of analysis owes much to
|
||||
artifacts of the sampling regime adopted. An improved
|
||||
understanding may emerge from combining sampling theory with an
|
||||
understanding of the factors controlling the form of species
|
||||
abundance distributions and species accumulation curves.",
|
||||
journal = "Ecology",
|
||||
publisher = "Eco Soc America",
|
||||
volume = 91,
|
||||
number = 9,
|
||||
pages = "2522--2533",
|
||||
month = sep,
|
||||
year = 2010
|
||||
}
|
||||
|
||||