MetabarcodingSchool/OBIJupyterHub
1
0
Fork 0
Code Issues Pull Requests 1 Actions Packages Projects Releases Wiki Activity

bug des volumes utilisateurs

Browse Source
This commit is contained in:
Eric Coissac
2025-11-05 17:29:12 +01:00
parent 0eae496a94
commit 78156a8c95
7 changed files with 209 additions and 19 deletions
Download Patch File Download Diff File Expand all files Collapse all files

10
obijupyterhub/Dockerfile
View File

@@ -30,6 +30,7 @@ RUN apt-get update && apt-get install -y \
r-base \
libcurl4-openssl-dev libssl-dev libxml2-dev \
curl \
git \
texlive-xetex texlive-fonts-recommended texlive-plain-generic \
ruby ruby-dev \
vim nano \
@@ -37,9 +38,16 @@ RUN apt-get update && apt-get install -y \
&& rm -rf /var/lib/apt/lists/* /tmp/* /var/tmp/*
# Installer R et packages
RUN R -e "install.packages(c('IRkernel','tidyverse','vegan','ade4','BiocManager','remotes'), repos='http://cran.rstudio.com/')" && \
RUN R -e "install.packages(c('IRkernel','tidyverse','vegan','ade4','BiocManager','remotes','igraph'), \
dependencies=TRUE, \
repos='http://cran.rstudio.com/')" && \
R -e "BiocManager::install('biomformat')" && \
R -e "remotes::install_github('metabaRfactory/metabaR')" && \
R -e "remotes::install_git('https://forge.metabarcoding.org/obitools/ROBIUtils.git')" && \
R -e "remotes::install_git('https://forge.metabarcoding.org/obitools/ROBITaxonomy.git')" && \
R -e "remotes::install_git('https://forge.metabarcoding.org/obitools/ROBITools.git')" && \
R -e "remotes::install_git('https://forge.metabarcoding.org/obitools/ROBITaxonomy.git')" && \
R -e "remotes::install_git('https://forge.metabarcoding.org/MetabarcodingSchool/biodiversity-metrics.git')" && \
R -e "IRkernel::installspec(user = FALSE)" && \
rm -rf /tmp/Rtmp*