A pretty jupyter login

2025-11-17 14:53:49 +01:00
25 changed files with 1 additions and 1056951 deletions
--- a/.gitignore
+++ b/.gitignore
@@ -3,7 +3,6 @@
 /jupyterhub_volumes/shared
 /jupyterhub_volumes/jupyterhub
 /jupyterhub_volumes/caddy
-/jupyterhub_volumes/course/data/Genbank
 /**/.DS_Store
 /web_src/**/*.RData
 /web_src/**/*.pdf
@@ -12,4 +11,3 @@
 /.luarc.json
 /sandbox
 *.log
-ncbitaxo_*
--- a/jupyterhub_volumes/course/data/Wolf_diet/R_stats.ipynb
+++ b/jupyterhub_volumes/course/data/Wolf_diet/R_stats.ipynb
--- a/jupyterhub_volumes/course/data/Wolf_diet/vert01_ref_db.fasta.gz
+++ b/jupyterhub_volumes/course/data/Wolf_diet/vert01_ref_db.fasta.gz
--- a/jupyterhub_volumes/course/data/Wolf_diet/wolf.ipynb
+++ b/jupyterhub_volumes/course/data/Wolf_diet/wolf.ipynb
--- a/jupyterhub_volumes/course/data/Wolf_diet/wolf.pdf
+++ b/jupyterhub_volumes/course/data/Wolf_diet/wolf.pdf
--- a/jupyterhub_volumes/course/data/Wolf_diet/wolf_F.fastq
+++ b/jupyterhub_volumes/course/data/Wolf_diet/wolf_F.fastq
--- a/jupyterhub_volumes/course/data/Wolf_diet/wolf_R.fastq
+++ b/jupyterhub_volumes/course/data/Wolf_diet/wolf_R.fastq
--- a/jupyterhub_volumes/course/data/Wolf_diet/wolf_data_wolf_diet_ngsfilter.csv
+++ b/jupyterhub_volumes/course/data/Wolf_diet/wolf_data_wolf_diet_ngsfilter.csv
@@ -1,8 +0,0 @@
-@param,matching,strict
-@param,primer_mismatches,2
-@param,indels,false
-experiment,sample,sample_tag,forward_primer,reverse_primer
-wolf_diet,13a_F730603,aattaac,TTAGATACCCCACTATGC,TAGAACAGGCTCCTCTAG
-wolf_diet,15a_F730814,gaagtag,TTAGATACCCCACTATGC,TAGAACAGGCTCCTCTAG
-wolf_diet,26a_F040644,gaatatc,TTAGATACCCCACTATGC,TAGAACAGGCTCCTCTAG
-wolf_diet,29a_F260619,gcctcct,TTAGATACCCCACTATGC,TAGAACAGGCTCCTCTAG
--- a/jupyterhub_volumes/course/data/ref_db_raw.fasta
+++ b/jupyterhub_volumes/course/data/ref_db_raw.fasta
--- a/jupyterhub_volumes/course/data/ref_db_raw.fasta.zip
+++ b/jupyterhub_volumes/course/data/ref_db_raw.fasta.zip
--- a/jupyterhub_volumes/web/obidoc/docs/cookbook/illumina/ncbitaxo.tgz
+++ b/jupyterhub_volumes/web/obidoc/docs/cookbook/illumina/ncbitaxo.tgz
--- a/jupyterhub_volumes/web/obidoc/docs/cookbook/illumina/results/wolf.fastq
+++ b/jupyterhub_volumes/web/obidoc/docs/cookbook/illumina/results/wolf.fastq
--- a/jupyterhub_volumes/web/obidoc/docs/cookbook/illumina/results/wolf_assembled.fastq
+++ b/jupyterhub_volumes/web/obidoc/docs/cookbook/illumina/results/wolf_assembled.fastq
--- a/jupyterhub_volumes/web/obidoc/docs/cookbook/illumina/results/wolf_assembled_assigned.fastq
+++ b/jupyterhub_volumes/web/obidoc/docs/cookbook/illumina/results/wolf_assembled_assigned.fastq
--- a/jupyterhub_volumes/web/obidoc/docs/cookbook/illumina/results/wolf_assembled_assigned_uniq.fasta
+++ b/jupyterhub_volumes/web/obidoc/docs/cookbook/illumina/results/wolf_assembled_assigned_uniq.fasta
--- a/jupyterhub_volumes/web/obidoc/docs/cookbook/illumina/wolf_data/wolf_F.fastq.gz
+++ b/jupyterhub_volumes/web/obidoc/docs/cookbook/illumina/wolf_data/wolf_F.fastq.gz
--- a/jupyterhub_volumes/web/obidoc/docs/cookbook/illumina/wolf_data/wolf_R.fastq.gz
+++ b/jupyterhub_volumes/web/obidoc/docs/cookbook/illumina/wolf_data/wolf_R.fastq.gz
--- a/jupyterhub_volumes/web/obidoc/docs/cookbook/illumina/wolf_diet_dataset.tgz
+++ b/jupyterhub_volumes/web/obidoc/docs/cookbook/illumina/wolf_diet_dataset.tgz
--- a/jupyterhub_volumes/web/obidoc/docs/principles/ncbitaxo.tgz
+++ b/jupyterhub_volumes/web/obidoc/docs/principles/ncbitaxo.tgz
--- a/jupyterhub_volumes/web/obidoc/images/welcome_obitools4.jpg
+++ b/jupyterhub_volumes/web/obidoc/images/welcome_obitools4.jpg
--- a/jupyterhub_volumes/web/obidoc/mermaid.min.js
+++ b/jupyterhub_volumes/web/obidoc/mermaid.min.js
--- a/jupyterhub_volumes/web/obidoc/obitools/obiannotate/ncbitaxo.tgz
+++ b/jupyterhub_volumes/web/obidoc/obitools/obiannotate/ncbitaxo.tgz
--- a/jupyterhub_volumes/web/obidoc/obitools/obigrep/ncbitaxo.tgz
+++ b/jupyterhub_volumes/web/obidoc/obitools/obigrep/ncbitaxo.tgz
--- a/obijupyterhub/jupyterhub_config.py
+++ b/obijupyterhub/jupyterhub_config.py
@@ -76,7 +76,7 @@ c.DockerSpawner.volumes = {
 }

 # Memory and CPU configuration (adjust according to your needs)
-c.DockerSpawner.mem_limit = '6G'
+c.DockerSpawner.mem_limit = '2G'
 c.DockerSpawner.cpu_limit = 1.0

 # User configuration - Simple password authentication for lab
--- a/ref_db_raw.fasta
+++ b/ref_db_raw.fasta