http://metabar:8888/obidoc/docs/ Recent content in Docs on OBITools4 documentation Hugo en-us Mon, 01 Jan 0001 00:00:00 +0000 http://metabar:8888/obidoc/docs/about/ Mon, 01 Jan 0001 00:00:00 +0000 http://metabar:8888/obidoc/docs/about/ <h2 id="what-are-obitools4"> What are OBITools4? <a class="anchor" href="#what-are-obitools4">#</a> </h2> <p>The development of <abbr title="A set of unix command line tools for manipulating DNA metabarcoding data">OBITools</abbr> began at <a href="https://leca.osug.fr"><abbr title="LECA: Laboratoire d&#39;écologie Alpine - Laboratory for Alpine Ecology">LECA</abbr> </a> ( <a href="https://www.univ-grenoble-alpes.fr/">University of Grenoble</a>) in the early 2000s, at the same time as the development of DNA metabarcoding methods in the same laboratory. The idea behind the OBITools project was to provide a set of UNIX command-line tools that mimic standard UNIX shell commands such as <code>grep</code>, <code>uniq</code> or <code>wc</code>, but which work on DNA sequence files. Unlike standard UNIX tools, where the processing unit is a line of text, with OBITools the processing unit is a sequence record. In addition, some commands implementing algorithms specific to the processing of DNA metabarcoding data have been added, making <abbr title="A set of unix command line tools for manipulating DNA metabarcoding data">OBITools</abbr> one of the sequence processing tools widely used on UNIX-like systems, suitable for the analysis of DNA metabarcoding data.</p>