1994 lines
141 KiB
Plaintext
1994 lines
141 KiB
Plaintext
#0 building with "orbstack" instance using docker driver
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#1 [internal] load build definition from Dockerfile
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#1 transferring dockerfile: 2.49kB done
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#1 DONE 0.0s
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#2 [internal] load metadata for docker.io/jupyter/base-notebook:latest
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#2 DONE 0.0s
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#3 [internal] load .dockerignore
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#3 transferring context: 2B done
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#3 DONE 0.0s
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#4 [rust-builder 1/6] FROM docker.io/jupyter/base-notebook:latest
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#4 CACHED
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#5 [internal] load build context
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#5 transferring context: 39B done
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#5 DONE 0.0s
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#6 [rust-builder 2/6] RUN apt-get update && apt-get install -y curl build-essential zlib1g-dev unzip && apt-get clean && rm -rf /var/lib/apt/lists/*
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#6 0.390 Get:1 http://ports.ubuntu.com/ubuntu-ports jammy InRelease [270 kB]
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#6 0.943 Get:2 http://ports.ubuntu.com/ubuntu-ports jammy-updates InRelease [128 kB]
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#6 1.074 Get:3 http://ports.ubuntu.com/ubuntu-ports jammy-backports InRelease [127 kB]
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#6 1.206 Get:4 http://ports.ubuntu.com/ubuntu-ports jammy-security InRelease [129 kB]
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#6 1.338 Get:5 http://ports.ubuntu.com/ubuntu-ports jammy/main arm64 Packages [1,758 kB]
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#6 1.659 Get:6 http://ports.ubuntu.com/ubuntu-ports jammy/restricted arm64 Packages [24.2 kB]
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#6 1.659 Get:7 http://ports.ubuntu.com/ubuntu-ports jammy/multiverse arm64 Packages [224 kB]
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#6 1.673 Get:8 http://ports.ubuntu.com/ubuntu-ports jammy/universe arm64 Packages [17.2 MB]
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#6 2.493 Get:9 http://ports.ubuntu.com/ubuntu-ports jammy-updates/restricted arm64 Packages [5,751 kB]
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#6 2.623 Get:10 http://ports.ubuntu.com/ubuntu-ports jammy-updates/universe arm64 Packages [1,618 kB]
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#6 2.662 Get:11 http://ports.ubuntu.com/ubuntu-ports jammy-updates/main arm64 Packages [3,594 kB]
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#6 2.752 Get:12 http://ports.ubuntu.com/ubuntu-ports jammy-updates/multiverse arm64 Packages [46.0 kB]
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#6 2.757 Get:13 http://ports.ubuntu.com/ubuntu-ports jammy-backports/universe arm64 Packages [33.3 kB]
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#6 2.757 Get:14 http://ports.ubuntu.com/ubuntu-ports jammy-backports/main arm64 Packages [83.5 kB]
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#6 2.758 Get:15 http://ports.ubuntu.com/ubuntu-ports jammy-security/universe arm64 Packages [1,317 kB]
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#6 2.781 Get:16 http://ports.ubuntu.com/ubuntu-ports jammy-security/multiverse arm64 Packages [39.5 kB]
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#6 2.783 Get:17 http://ports.ubuntu.com/ubuntu-ports jammy-security/main arm64 Packages [3,258 kB]
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#6 2.861 Get:18 http://ports.ubuntu.com/ubuntu-ports jammy-security/restricted arm64 Packages [5,552 kB]
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#6 3.865 Fetched 41.2 MB in 4s (11.0 MB/s)
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#6 3.865 Reading package lists...
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#6 4.530 Reading package lists...
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#6 5.171 Building dependency tree...
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#6 5.313 Reading state information...
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#6 5.475 The following additional packages will be installed:
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#6 5.475 binutils binutils-aarch64-linux-gnu binutils-common cpp cpp-11 dirmngr
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#6 5.475 dpkg-dev fakeroot fontconfig-config g++ g++-11 gcc gcc-11 gcc-11-base
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#6 5.475 gcc-12-base gnupg gnupg-l10n gnupg-utils gpg gpg-agent gpg-wks-client
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#6 5.475 gpg-wks-server gpgconf gpgsm gpgv libalgorithm-diff-perl
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#6 5.475 libalgorithm-diff-xs-perl libalgorithm-merge-perl libasan6 libassuan0
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#6 5.475 libatomic1 libbinutils libbrotli1 libbsd0 libc-dev-bin libc-devtools libc6
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#6 5.475 libc6-dev libcc1-0 libcrypt-dev libctf-nobfd0 libctf0 libcurl4 libdeflate0
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#6 5.475 libdpkg-perl libexpat1 libfakeroot libfile-fcntllock-perl libfontconfig1
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#6 5.475 libfreetype6 libgcc-11-dev libgcc-s1 libgd3 libgdbm-compat4 libgdbm6
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#6 5.475 libgomp1 libhwasan0 libisl23 libitm1 libjbig0 libjpeg-turbo8 libjpeg8
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#6 5.475 libksba8 libldap-2.5-0 libldap-common liblocale-gettext-perl liblsan0 libmd0
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#6 5.475 libmpc3 libmpfr6 libnghttp2-14 libnpth0 libnsl-dev libperl5.34 libpng16-16
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#6 5.475 libreadline8 librtmp1 libsasl2-2 libsasl2-modules libsasl2-modules-db
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#6 5.475 libsqlite3-0 libssh-4 libstdc++-11-dev libstdc++6 libtiff5 libtirpc-dev
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#6 5.475 libtsan0 libubsan1 libwebp7 libx11-6 libx11-data libxau6 libxcb1 libxdmcp6
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#6 5.475 libxpm4 linux-libc-dev lto-disabled-list make manpages manpages-dev netbase
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#6 5.475 patch perl perl-base perl-modules-5.34 pinentry-curses readline-common
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#6 5.476 rpcsvc-proto ucf xz-utils
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#6 5.476 Suggested packages:
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#6 5.476 binutils-doc cpp-doc gcc-11-locales dbus-user-session libpam-systemd
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#6 5.476 pinentry-gnome3 tor debian-keyring gcc-11-doc gcc-multilib autoconf automake
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#6 5.476 libtool flex bison gdb gcc-doc parcimonie xloadimage scdaemon glibc-doc git
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#6 5.476 bzr libgd-tools gdbm-l10n libsasl2-modules-gssapi-mit
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#6 5.476 | libsasl2-modules-gssapi-heimdal libsasl2-modules-ldap libsasl2-modules-otp
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#6 5.476 libsasl2-modules-sql libstdc++-11-doc make-doc man-browser ed diffutils-doc
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#6 5.476 perl-doc libterm-readline-gnu-perl | libterm-readline-perl-perl
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#6 5.476 libtap-harness-archive-perl pinentry-doc readline-doc zip
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#6 5.476 Recommended packages:
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#6 5.476 libnss-nis libnss-nisplus
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#6 5.591 The following NEW packages will be installed:
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#6 5.591 binutils binutils-aarch64-linux-gnu binutils-common build-essential cpp
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#6 5.591 cpp-11 curl dirmngr dpkg-dev fakeroot fontconfig-config g++ g++-11 gcc
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#6 5.591 gcc-11 gcc-11-base gnupg gnupg-l10n gnupg-utils gpg gpg-agent gpg-wks-client
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#6 5.591 gpg-wks-server gpgconf gpgsm libalgorithm-diff-perl
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#6 5.591 libalgorithm-diff-xs-perl libalgorithm-merge-perl libasan6 libassuan0
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#6 5.591 libatomic1 libbinutils libbrotli1 libbsd0 libc-dev-bin libc-devtools
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#6 5.591 libc6-dev libcc1-0 libcrypt-dev libctf-nobfd0 libctf0 libcurl4 libdeflate0
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#6 5.591 libdpkg-perl libexpat1 libfakeroot libfile-fcntllock-perl libfontconfig1
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#6 5.591 libfreetype6 libgcc-11-dev libgd3 libgdbm-compat4 libgdbm6 libgomp1
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#6 5.591 libhwasan0 libisl23 libitm1 libjbig0 libjpeg-turbo8 libjpeg8 libksba8
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#6 5.591 libldap-2.5-0 libldap-common liblocale-gettext-perl liblsan0 libmd0 libmpc3
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#6 5.591 libmpfr6 libnghttp2-14 libnpth0 libnsl-dev libperl5.34 libpng16-16
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#6 5.591 libreadline8 librtmp1 libsasl2-2 libsasl2-modules libsasl2-modules-db
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#6 5.591 libsqlite3-0 libssh-4 libstdc++-11-dev libtiff5 libtirpc-dev libtsan0
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#6 5.591 libubsan1 libwebp7 libx11-6 libx11-data libxau6 libxcb1 libxdmcp6 libxpm4
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#6 5.591 linux-libc-dev lto-disabled-list make manpages manpages-dev netbase patch
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#6 5.591 perl perl-modules-5.34 pinentry-curses readline-common rpcsvc-proto ucf
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#6 5.591 unzip xz-utils zlib1g-dev
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#6 5.592 The following packages will be upgraded:
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#6 5.592 gcc-12-base gpgv libc6 libgcc-s1 libstdc++6 perl-base
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#6 5.804 6 upgraded, 108 newly installed, 0 to remove and 44 not upgraded.
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#6 5.804 Need to get 86.4 MB of archives.
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#6 5.804 After this operation, 280 MB of additional disk space will be used.
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#6 5.804 Get:1 http://ports.ubuntu.com/ubuntu-ports jammy-updates/main arm64 perl-base arm64 5.34.0-3ubuntu1.5 [1,710 kB]
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#6 6.620 Get:2 http://ports.ubuntu.com/ubuntu-ports jammy-updates/main arm64 gcc-12-base arm64 12.3.0-1ubuntu1~22.04.2 [20.6 kB]
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#6 6.623 Get:3 http://ports.ubuntu.com/ubuntu-ports jammy-updates/main arm64 libgcc-s1 arm64 12.3.0-1ubuntu1~22.04.2 [39.7 kB]
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#6 6.624 Get:4 http://ports.ubuntu.com/ubuntu-ports jammy-updates/main arm64 libstdc++6 arm64 12.3.0-1ubuntu1~22.04.2 [661 kB]
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#6 6.649 Get:5 http://ports.ubuntu.com/ubuntu-ports jammy-updates/main arm64 libc6 arm64 2.35-0ubuntu3.11 [2,709 kB]
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#6 6.785 Get:6 http://ports.ubuntu.com/ubuntu-ports jammy/main arm64 liblocale-gettext-perl arm64 1.07-4build3 [16.9 kB]
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#6 6.785 Get:7 http://ports.ubuntu.com/ubuntu-ports jammy-updates/main arm64 perl-modules-5.34 all 5.34.0-3ubuntu1.5 [2,977 kB]
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#6 6.858 Get:8 http://ports.ubuntu.com/ubuntu-ports jammy/main arm64 libgdbm6 arm64 1.23-1 [34.1 kB]
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#6 6.859 Get:9 http://ports.ubuntu.com/ubuntu-ports jammy/main arm64 libgdbm-compat4 arm64 1.23-1 [6,294 B]
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#6 6.859 Get:10 http://ports.ubuntu.com/ubuntu-ports jammy-updates/main arm64 libperl5.34 arm64 5.34.0-3ubuntu1.5 [4,721 kB]
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#6 7.075 Get:11 http://ports.ubuntu.com/ubuntu-ports jammy-updates/main arm64 perl arm64 5.34.0-3ubuntu1.5 [232 kB]
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#6 7.088 Get:12 http://ports.ubuntu.com/ubuntu-ports jammy-updates/main arm64 gpgv arm64 2.2.27-3ubuntu2.4 [134 kB]
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#6 7.096 Get:13 http://ports.ubuntu.com/ubuntu-ports jammy/main arm64 libmd0 arm64 1.0.4-1build1 [23.8 kB]
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#6 7.096 Get:14 http://ports.ubuntu.com/ubuntu-ports jammy/main arm64 libbsd0 arm64 0.11.5-1 [43.7 kB]
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#6 7.097 Get:15 http://ports.ubuntu.com/ubuntu-ports jammy-updates/main arm64 libexpat1 arm64 2.4.7-1ubuntu0.6 [77.8 kB]
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#6 7.098 Get:16 http://ports.ubuntu.com/ubuntu-ports jammy/main arm64 readline-common all 8.1.2-1 [53.5 kB]
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#6 7.098 Get:17 http://ports.ubuntu.com/ubuntu-ports jammy/main arm64 libreadline8 arm64 8.1.2-1 [153 kB]
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#6 7.106 Get:18 http://ports.ubuntu.com/ubuntu-ports jammy-updates/main arm64 libsqlite3-0 arm64 3.37.2-2ubuntu0.5 [636 kB]
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#6 7.115 Get:19 http://ports.ubuntu.com/ubuntu-ports jammy/main arm64 netbase all 6.3 [12.9 kB]
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#6 7.173 Get:20 http://ports.ubuntu.com/ubuntu-ports jammy/main arm64 ucf all 3.0043 [56.1 kB]
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#6 7.188 Get:21 http://ports.ubuntu.com/ubuntu-ports jammy-updates/main arm64 libnghttp2-14 arm64 1.43.0-1ubuntu0.2 [76.0 kB]
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#6 7.192 Get:22 http://ports.ubuntu.com/ubuntu-ports jammy/main arm64 libpng16-16 arm64 1.6.37-3build5 [189 kB]
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#6 7.298 Get:23 http://ports.ubuntu.com/ubuntu-ports jammy/main arm64 libxau6 arm64 1:1.0.9-1build5 [7,624 B]
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#6 7.301 Get:24 http://ports.ubuntu.com/ubuntu-ports jammy/main arm64 libxdmcp6 arm64 1:1.1.3-0ubuntu5 [10.8 kB]
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#6 7.301 Get:25 http://ports.ubuntu.com/ubuntu-ports jammy/main arm64 libxcb1 arm64 1.14-3ubuntu3 [49.0 kB]
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#6 7.303 Get:26 http://ports.ubuntu.com/ubuntu-ports jammy-updates/main arm64 libx11-data all 2:1.7.5-1ubuntu0.3 [120 kB]
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#6 7.376 Get:27 http://ports.ubuntu.com/ubuntu-ports jammy-updates/main arm64 libx11-6 arm64 2:1.7.5-1ubuntu0.3 [661 kB]
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#6 7.392 Get:28 http://ports.ubuntu.com/ubuntu-ports jammy/main arm64 manpages all 5.10-1ubuntu1 [1,375 kB]
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#6 7.412 Get:29 http://ports.ubuntu.com/ubuntu-ports jammy/main arm64 xz-utils arm64 5.2.5-2ubuntu1 [84.4 kB]
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#6 7.414 Get:30 http://ports.ubuntu.com/ubuntu-ports jammy-updates/main arm64 binutils-common arm64 2.38-4ubuntu2.10 [223 kB]
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#6 7.424 Get:31 http://ports.ubuntu.com/ubuntu-ports jammy-updates/main arm64 libbinutils arm64 2.38-4ubuntu2.10 [824 kB]
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#6 7.479 Get:32 http://ports.ubuntu.com/ubuntu-ports jammy-updates/main arm64 libctf-nobfd0 arm64 2.38-4ubuntu2.10 [109 kB]
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#6 7.496 Get:33 http://ports.ubuntu.com/ubuntu-ports jammy-updates/main arm64 libctf0 arm64 2.38-4ubuntu2.10 [103 kB]
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#6 7.502 Get:34 http://ports.ubuntu.com/ubuntu-ports jammy-updates/main arm64 binutils-aarch64-linux-gnu arm64 2.38-4ubuntu2.10 [3,225 kB]
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#6 7.600 Get:35 http://ports.ubuntu.com/ubuntu-ports jammy-updates/main arm64 binutils arm64 2.38-4ubuntu2.10 [3,160 B]
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#6 7.606 Get:36 http://ports.ubuntu.com/ubuntu-ports jammy-updates/main arm64 libc-dev-bin arm64 2.35-0ubuntu3.11 [19.7 kB]
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#6 7.606 Get:37 http://ports.ubuntu.com/ubuntu-ports jammy-updates/main arm64 linux-libc-dev arm64 5.15.0-161.171 [1,284 kB]
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#6 7.777 Get:38 http://ports.ubuntu.com/ubuntu-ports jammy/main arm64 libcrypt-dev arm64 1:4.4.27-1 [119 kB]
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#6 7.784 Get:39 http://ports.ubuntu.com/ubuntu-ports jammy/main arm64 rpcsvc-proto arm64 1.4.2-0ubuntu6 [65.4 kB]
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#6 7.794 Get:40 http://ports.ubuntu.com/ubuntu-ports jammy-updates/main arm64 libtirpc-dev arm64 1.3.2-2ubuntu0.1 [199 kB]
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#6 7.801 Get:41 http://ports.ubuntu.com/ubuntu-ports jammy/main arm64 libnsl-dev arm64 1.3.0-2build2 [72.1 kB]
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#6 7.807 Get:42 http://ports.ubuntu.com/ubuntu-ports jammy-updates/main arm64 libc6-dev arm64 2.35-0ubuntu3.11 [1,548 kB]
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#6 7.829 Get:43 http://ports.ubuntu.com/ubuntu-ports jammy-updates/main arm64 gcc-11-base arm64 11.4.0-1ubuntu1~22.04.2 [20.8 kB]
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#6 7.830 Get:44 http://ports.ubuntu.com/ubuntu-ports jammy/main arm64 libisl23 arm64 0.24-2build1 [689 kB]
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#6 7.837 Get:45 http://ports.ubuntu.com/ubuntu-ports jammy/main arm64 libmpfr6 arm64 4.1.0-3build3 [245 kB]
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#6 7.839 Get:46 http://ports.ubuntu.com/ubuntu-ports jammy/main arm64 libmpc3 arm64 1.2.1-2build1 [48.1 kB]
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#6 7.882 Get:47 http://ports.ubuntu.com/ubuntu-ports jammy-updates/main arm64 cpp-11 arm64 11.4.0-1ubuntu1~22.04.2 [9,717 kB]
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#6 8.119 Get:48 http://ports.ubuntu.com/ubuntu-ports jammy/main arm64 cpp arm64 4:11.2.0-1ubuntu1 [27.7 kB]
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#6 8.121 Get:49 http://ports.ubuntu.com/ubuntu-ports jammy-updates/main arm64 libcc1-0 arm64 12.3.0-1ubuntu1~22.04.2 [45.1 kB]
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#6 8.123 Get:50 http://ports.ubuntu.com/ubuntu-ports jammy-updates/main arm64 libgomp1 arm64 12.3.0-1ubuntu1~22.04.2 [124 kB]
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#6 8.124 Get:51 http://ports.ubuntu.com/ubuntu-ports jammy-updates/main arm64 libitm1 arm64 12.3.0-1ubuntu1~22.04.2 [28.5 kB]
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#6 8.125 Get:52 http://ports.ubuntu.com/ubuntu-ports jammy-updates/main arm64 libatomic1 arm64 12.3.0-1ubuntu1~22.04.2 [10.8 kB]
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#6 8.125 Get:53 http://ports.ubuntu.com/ubuntu-ports jammy-updates/main arm64 libasan6 arm64 11.4.0-1ubuntu1~22.04.2 [2,236 kB]
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#6 8.171 Get:54 http://ports.ubuntu.com/ubuntu-ports jammy-updates/main arm64 liblsan0 arm64 12.3.0-1ubuntu1~22.04.2 [1,038 kB]
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#6 8.192 Get:55 http://ports.ubuntu.com/ubuntu-ports jammy-updates/main arm64 libtsan0 arm64 11.4.0-1ubuntu1~22.04.2 [2,239 kB]
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#6 8.246 Get:56 http://ports.ubuntu.com/ubuntu-ports jammy-updates/main arm64 libubsan1 arm64 12.3.0-1ubuntu1~22.04.2 [967 kB]
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#6 8.271 Get:57 http://ports.ubuntu.com/ubuntu-ports jammy-updates/main arm64 libhwasan0 arm64 12.3.0-1ubuntu1~22.04.2 [1,120 kB]
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#6 8.295 Get:58 http://ports.ubuntu.com/ubuntu-ports jammy-updates/main arm64 libgcc-11-dev arm64 11.4.0-1ubuntu1~22.04.2 [1,145 kB]
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#6 8.320 Get:59 http://ports.ubuntu.com/ubuntu-ports jammy-updates/main arm64 gcc-11 arm64 11.4.0-1ubuntu1~22.04.2 [19.5 MB]
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#6 8.902 Get:60 http://ports.ubuntu.com/ubuntu-ports jammy/main arm64 gcc arm64 4:11.2.0-1ubuntu1 [5,128 B]
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#6 8.902 Get:61 http://ports.ubuntu.com/ubuntu-ports jammy-updates/main arm64 libstdc++-11-dev arm64 11.4.0-1ubuntu1~22.04.2 [2,088 kB]
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#6 8.932 Get:62 http://ports.ubuntu.com/ubuntu-ports jammy-updates/main arm64 g++-11 arm64 11.4.0-1ubuntu1~22.04.2 [11.2 MB]
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#6 9.207 Get:63 http://ports.ubuntu.com/ubuntu-ports jammy/main arm64 g++ arm64 4:11.2.0-1ubuntu1 [1,394 B]
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#6 9.212 Get:64 http://ports.ubuntu.com/ubuntu-ports jammy/main arm64 make arm64 4.3-4.1build1 [177 kB]
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#6 9.226 Get:65 http://ports.ubuntu.com/ubuntu-ports jammy-updates/main arm64 libdpkg-perl all 1.21.1ubuntu2.6 [237 kB]
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#6 9.230 Get:66 http://ports.ubuntu.com/ubuntu-ports jammy/main arm64 patch arm64 2.7.6-7build2 [105 kB]
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#6 9.235 Get:67 http://ports.ubuntu.com/ubuntu-ports jammy/main arm64 lto-disabled-list all 24 [12.5 kB]
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#6 9.236 Get:68 http://ports.ubuntu.com/ubuntu-ports jammy-updates/main arm64 dpkg-dev all 1.21.1ubuntu2.6 [922 kB]
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#6 9.246 Get:69 http://ports.ubuntu.com/ubuntu-ports jammy/main arm64 build-essential arm64 12.9ubuntu3 [4,740 B]
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#6 9.246 Get:70 http://ports.ubuntu.com/ubuntu-ports jammy/main arm64 libbrotli1 arm64 1.0.9-2build6 [314 kB]
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#6 9.249 Get:71 http://ports.ubuntu.com/ubuntu-ports jammy-updates/main arm64 libsasl2-modules-db arm64 2.1.27+dfsg2-3ubuntu1.2 [21.1 kB]
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#6 9.304 Get:72 http://ports.ubuntu.com/ubuntu-ports jammy-updates/main arm64 libsasl2-2 arm64 2.1.27+dfsg2-3ubuntu1.2 [55.6 kB]
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#6 9.322 Get:73 http://ports.ubuntu.com/ubuntu-ports jammy-updates/main arm64 libldap-2.5-0 arm64 2.5.19+dfsg-0ubuntu0.22.04.1 [181 kB]
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#6 9.328 Get:74 http://ports.ubuntu.com/ubuntu-ports jammy/main arm64 librtmp1 arm64 2.4+20151223.gitfa8646d.1-2build4 [59.2 kB]
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#6 9.329 Get:75 http://ports.ubuntu.com/ubuntu-ports jammy-updates/main arm64 libssh-4 arm64 0.9.6-2ubuntu0.22.04.5 [185 kB]
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#6 9.401 Get:76 http://ports.ubuntu.com/ubuntu-ports jammy-updates/main arm64 libcurl4 arm64 7.81.0-1ubuntu1.21 [284 kB]
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#6 9.409 Get:77 http://ports.ubuntu.com/ubuntu-ports jammy-updates/main arm64 curl arm64 7.81.0-1ubuntu1.21 [190 kB]
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#6 9.414 Get:78 http://ports.ubuntu.com/ubuntu-ports jammy/main arm64 libassuan0 arm64 2.5.5-1build1 [36.5 kB]
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#6 9.414 Get:79 http://ports.ubuntu.com/ubuntu-ports jammy-updates/main arm64 gpgconf arm64 2.2.27-3ubuntu2.4 [92.9 kB]
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#6 9.415 Get:80 http://ports.ubuntu.com/ubuntu-ports jammy-updates/main arm64 libksba8 arm64 1.6.0-2ubuntu0.2 [117 kB]
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#6 9.418 Get:81 http://ports.ubuntu.com/ubuntu-ports jammy/main arm64 libnpth0 arm64 1.6-3build2 [8,156 B]
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#6 9.418 Get:82 http://ports.ubuntu.com/ubuntu-ports jammy-updates/main arm64 dirmngr arm64 2.2.27-3ubuntu2.4 [289 kB]
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#6 9.426 Get:83 http://ports.ubuntu.com/ubuntu-ports jammy/main arm64 libfakeroot arm64 1.28-1ubuntu1 [31.5 kB]
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#6 9.426 Get:84 http://ports.ubuntu.com/ubuntu-ports jammy/main arm64 fakeroot arm64 1.28-1ubuntu1 [60.5 kB]
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#6 9.498 Get:85 http://ports.ubuntu.com/ubuntu-ports jammy/main arm64 fontconfig-config all 2.13.1-4.2ubuntu5 [29.1 kB]
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#6 10.57 Get:112 http://ports.ubuntu.com/ubuntu-ports jammy/main arm64 manpages-dev all 5.10-1ubuntu1 [2,309 kB]
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#6 16.12 Preparing to unpack .../027-libtirpc-dev_1.3.2-2ubuntu0.1_arm64.deb ...
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#6 16.14 Selecting previously unselected package libnsl-dev:arm64.
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#6 16.14 Preparing to unpack .../028-libnsl-dev_1.3.0-2build2_arm64.deb ...
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#6 16.16 Selecting previously unselected package libc6-dev:arm64.
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#6 16.16 Preparing to unpack .../029-libc6-dev_2.35-0ubuntu3.11_arm64.deb ...
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#6 16.24 Selecting previously unselected package gcc-11-base:arm64.
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#6 16.24 Preparing to unpack .../030-gcc-11-base_11.4.0-1ubuntu1~22.04.2_arm64.deb ...
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#6 16.32 Selecting previously unselected package libisl23:arm64.
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#6 16.32 Preparing to unpack .../031-libisl23_0.24-2build1_arm64.deb ...
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#6 16.40 Selecting previously unselected package libmpfr6:arm64.
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#6 16.40 Preparing to unpack .../032-libmpfr6_4.1.0-3build3_arm64.deb ...
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#6 16.43 Selecting previously unselected package libmpc3:arm64.
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#6 16.50 Selecting previously unselected package cpp-11.
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#6 16.50 Preparing to unpack .../034-cpp-11_11.4.0-1ubuntu1~22.04.2_arm64.deb ...
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#6 16.65 Preparing to unpack .../035-cpp_4%3a11.2.0-1ubuntu1_arm64.deb ...
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#6 16.69 Selecting previously unselected package libcc1-0:arm64.
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#6 16.69 Preparing to unpack .../036-libcc1-0_12.3.0-1ubuntu1~22.04.2_arm64.deb ...
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#6 16.73 Selecting previously unselected package libgomp1:arm64.
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#6 16.73 Preparing to unpack .../037-libgomp1_12.3.0-1ubuntu1~22.04.2_arm64.deb ...
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#6 16.81 Selecting previously unselected package libitm1:arm64.
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#6 16.81 Preparing to unpack .../038-libitm1_12.3.0-1ubuntu1~22.04.2_arm64.deb ...
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#6 16.88 Selecting previously unselected package libatomic1:arm64.
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#6 16.88 Preparing to unpack .../039-libatomic1_12.3.0-1ubuntu1~22.04.2_arm64.deb ...
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#6 16.91 Selecting previously unselected package libasan6:arm64.
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#6 16.91 Preparing to unpack .../040-libasan6_11.4.0-1ubuntu1~22.04.2_arm64.deb ...
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#6 17.00 Selecting previously unselected package liblsan0:arm64.
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#6 17.00 Preparing to unpack .../041-liblsan0_12.3.0-1ubuntu1~22.04.2_arm64.deb ...
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#6 17.04 Selecting previously unselected package libtsan0:arm64.
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#6 17.11 Selecting previously unselected package libubsan1:arm64.
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#6 17.18 Selecting previously unselected package libhwasan0:arm64.
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#6 17.18 Preparing to unpack .../044-libhwasan0_12.3.0-1ubuntu1~22.04.2_arm64.deb ...
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#6 17.20 Unpacking libhwasan0:arm64 (12.3.0-1ubuntu1~22.04.2) ...
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#6 17.25 Selecting previously unselected package libgcc-11-dev:arm64.
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#6 17.25 Preparing to unpack .../045-libgcc-11-dev_11.4.0-1ubuntu1~22.04.2_arm64.deb ...
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#6 17.33 Selecting previously unselected package gcc-11.
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#6 17.33 Preparing to unpack .../046-gcc-11_11.4.0-1ubuntu1~22.04.2_arm64.deb ...
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#6 17.58 Selecting previously unselected package gcc.
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#6 17.58 Preparing to unpack .../047-gcc_4%3a11.2.0-1ubuntu1_arm64.deb ...
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#6 17.67 Selecting previously unselected package libstdc++-11-dev:arm64.
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#6 17.80 Selecting previously unselected package g++-11.
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#6 17.80 Preparing to unpack .../049-g++-11_11.4.0-1ubuntu1~22.04.2_arm64.deb ...
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#6 18.02 Preparing to unpack .../050-g++_4%3a11.2.0-1ubuntu1_arm64.deb ...
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#6 18.06 Unpacking g++ (4:11.2.0-1ubuntu1) ...
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#6 18.15 Selecting previously unselected package make.
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#6 18.15 Preparing to unpack .../051-make_4.3-4.1build1_arm64.deb ...
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#6 18.15 Unpacking make (4.3-4.1build1) ...
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#6 18.24 Selecting previously unselected package libdpkg-perl.
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#6 18.24 Preparing to unpack .../052-libdpkg-perl_1.21.1ubuntu2.6_all.deb ...
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#6 18.25 Unpacking libdpkg-perl (1.21.1ubuntu2.6) ...
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#6 18.28 Selecting previously unselected package patch.
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#6 18.28 Preparing to unpack .../053-patch_2.7.6-7build2_arm64.deb ...
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#6 18.28 Unpacking patch (2.7.6-7build2) ...
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#6 18.30 Selecting previously unselected package lto-disabled-list.
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#6 18.30 Preparing to unpack .../054-lto-disabled-list_24_all.deb ...
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#6 18.31 Unpacking lto-disabled-list (24) ...
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#6 18.33 Selecting previously unselected package dpkg-dev.
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#6 18.33 Preparing to unpack .../055-dpkg-dev_1.21.1ubuntu2.6_all.deb ...
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#6 18.35 Selecting previously unselected package build-essential.
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#6 18.35 Preparing to unpack .../056-build-essential_12.9ubuntu3_arm64.deb ...
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#6 18.35 Unpacking build-essential (12.9ubuntu3) ...
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#6 18.38 Selecting previously unselected package libbrotli1:arm64.
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#6 18.38 Preparing to unpack .../057-libbrotli1_1.0.9-2build6_arm64.deb ...
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#6 18.41 Selecting previously unselected package libsasl2-modules-db:arm64.
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#6 18.41 Preparing to unpack .../058-libsasl2-modules-db_2.1.27+dfsg2-3ubuntu1.2_arm64.deb ...
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#6 18.41 Unpacking libsasl2-modules-db:arm64 (2.1.27+dfsg2-3ubuntu1.2) ...
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#6 18.49 Selecting previously unselected package libsasl2-2:arm64.
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#6 18.49 Preparing to unpack .../059-libsasl2-2_2.1.27+dfsg2-3ubuntu1.2_arm64.deb ...
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#6 18.49 Unpacking libsasl2-2:arm64 (2.1.27+dfsg2-3ubuntu1.2) ...
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#6 18.59 Selecting previously unselected package libldap-2.5-0:arm64.
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#6 18.59 Preparing to unpack .../060-libldap-2.5-0_2.5.19+dfsg-0ubuntu0.22.04.1_arm64.deb ...
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#6 18.59 Unpacking libldap-2.5-0:arm64 (2.5.19+dfsg-0ubuntu0.22.04.1) ...
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#6 18.70 Selecting previously unselected package librtmp1:arm64.
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#6 18.70 Preparing to unpack .../061-librtmp1_2.4+20151223.gitfa8646d.1-2build4_arm64.deb ...
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#6 18.71 Unpacking librtmp1:arm64 (2.4+20151223.gitfa8646d.1-2build4) ...
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#6 18.75 Selecting previously unselected package libssh-4:arm64.
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#6 18.75 Preparing to unpack .../062-libssh-4_0.9.6-2ubuntu0.22.04.5_arm64.deb ...
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#6 18.84 Selecting previously unselected package libcurl4:arm64.
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#6 18.84 Preparing to unpack .../063-libcurl4_7.81.0-1ubuntu1.21_arm64.deb ...
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#6 18.85 Unpacking libcurl4:arm64 (7.81.0-1ubuntu1.21) ...
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#6 18.94 Selecting previously unselected package curl.
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#6 18.94 Preparing to unpack .../064-curl_7.81.0-1ubuntu1.21_arm64.deb ...
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#6 19.04 Selecting previously unselected package libassuan0:arm64.
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#6 19.04 Preparing to unpack .../065-libassuan0_2.5.5-1build1_arm64.deb ...
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#6 19.13 Selecting previously unselected package gpgconf.
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#6 19.14 Preparing to unpack .../066-gpgconf_2.2.27-3ubuntu2.4_arm64.deb ...
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#6 19.18 Selecting previously unselected package libksba8:arm64.
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#6 19.18 Preparing to unpack .../067-libksba8_1.6.0-2ubuntu0.2_arm64.deb ...
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#6 19.26 Selecting previously unselected package libnpth0:arm64.
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#6 19.30 Selecting previously unselected package dirmngr.
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#6 19.40 Selecting previously unselected package libfakeroot:arm64.
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#6 19.41 Preparing to unpack .../070-libfakeroot_1.28-1ubuntu1_arm64.deb ...
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#6 19.46 Selecting previously unselected package fontconfig-config.
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#6 19.46 Preparing to unpack .../072-fontconfig-config_2.13.1-4.2ubuntu5_all.deb ...
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#6 19.48 Selecting previously unselected package gnupg-l10n.
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#6 19.51 Selecting previously unselected package gnupg-utils.
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#6 19.54 Selecting previously unselected package gpg.
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#6 19.62 Selecting previously unselected package pinentry-curses.
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#6 19.66 Selecting previously unselected package gpg-agent.
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#6 19.74 Selecting previously unselected package gpg-wks-client.
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#6 19.80 Selecting previously unselected package gpg-wks-server.
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#6 19.85 Selecting previously unselected package gpgsm.
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#6 19.88 Selecting previously unselected package gnupg.
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#6 19.91 Selecting previously unselected package libalgorithm-diff-perl.
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#6 19.94 Selecting previously unselected package libalgorithm-diff-xs-perl.
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#6 19.94 Preparing to unpack .../083-libalgorithm-diff-xs-perl_0.04-6build3_arm64.deb ...
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#6 20.00 Selecting previously unselected package libfreetype6:arm64.
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#6 20.00 Preparing to unpack .../085-libfreetype6_2.11.1+dfsg-1ubuntu0.3_arm64.deb ...
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#6 20.09 Selecting previously unselected package libfontconfig1:arm64.
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#6 20.09 Preparing to unpack .../086-libfontconfig1_2.13.1-4.2ubuntu5_arm64.deb ...
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#6 20.18 Selecting previously unselected package libjpeg-turbo8:arm64.
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#6 20.22 Selecting previously unselected package libjpeg8:arm64.
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#6 20.22 Preparing to unpack .../088-libjpeg8_8c-2ubuntu10_arm64.deb ...
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#6 20.26 Selecting previously unselected package libdeflate0:arm64.
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#6 20.27 Unpacking libdeflate0:arm64 (1.10-2) ...
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#6 20.36 Selecting previously unselected package libjbig0:arm64.
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#6 20.37 Preparing to unpack .../090-libjbig0_2.1-3.1ubuntu0.22.04.1_arm64.deb ...
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#6 20.37 Unpacking libjbig0:arm64 (2.1-3.1ubuntu0.22.04.1) ...
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#6 20.47 Selecting previously unselected package libwebp7:arm64.
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#6 20.47 Preparing to unpack .../091-libwebp7_1.2.2-2ubuntu0.22.04.2_arm64.deb ...
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#6 20.58 Selecting previously unselected package libtiff5:arm64.
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#6 20.58 Preparing to unpack .../092-libtiff5_4.3.0-6ubuntu0.12_arm64.deb ...
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#6 20.63 Selecting previously unselected package libxpm4:arm64.
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#6 20.63 Preparing to unpack .../093-libxpm4_1%3a3.5.12-1ubuntu0.22.04.2_arm64.deb ...
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#6 20.67 Selecting previously unselected package libgd3:arm64.
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#6 20.67 Preparing to unpack .../094-libgd3_2.3.0-2ubuntu2.3_arm64.deb ...
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#6 20.67 Unpacking libgd3:arm64 (2.3.0-2ubuntu2.3) ...
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#6 20.69 Selecting previously unselected package libc-devtools.
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#6 20.69 Preparing to unpack .../095-libc-devtools_2.35-0ubuntu3.11_arm64.deb ...
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#6 20.70 Unpacking libc-devtools (2.35-0ubuntu3.11) ...
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#6 20.72 Selecting previously unselected package libfile-fcntllock-perl.
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#6 20.72 Preparing to unpack .../096-libfile-fcntllock-perl_0.22-3build7_arm64.deb ...
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#6 20.72 Unpacking libfile-fcntllock-perl (0.22-3build7) ...
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#6 20.80 Selecting previously unselected package libldap-common.
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#6 20.80 Preparing to unpack .../097-libldap-common_2.5.19+dfsg-0ubuntu0.22.04.1_all.deb ...
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#6 20.80 Unpacking libldap-common (2.5.19+dfsg-0ubuntu0.22.04.1) ...
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#6 20.89 Selecting previously unselected package libsasl2-modules:arm64.
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#6 20.89 Preparing to unpack .../098-libsasl2-modules_2.1.27+dfsg2-3ubuntu1.2_arm64.deb ...
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#6 20.90 Unpacking libsasl2-modules:arm64 (2.1.27+dfsg2-3ubuntu1.2) ...
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#6 20.98 Selecting previously unselected package manpages-dev.
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#6 21.25 Selecting previously unselected package unzip.
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#6 21.25 Preparing to unpack .../100-unzip_6.0-26ubuntu3.2_arm64.deb ...
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#6 21.34 Selecting previously unselected package zlib1g-dev:arm64.
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#6 21.34 Preparing to unpack .../101-zlib1g-dev_1%3a1.2.11.dfsg-2ubuntu9.2_arm64.deb ...
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#6 21.34 Unpacking zlib1g-dev:arm64 (1:1.2.11.dfsg-2ubuntu9.2) ...
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#6 21.38 Setting up libksba8:arm64 (1.6.0-2ubuntu0.2) ...
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#6 21.40 Setting up libexpat1:arm64 (2.4.7-1ubuntu0.6) ...
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#6 21.41 Setting up gcc-11-base:arm64 (11.4.0-1ubuntu1~22.04.2) ...
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#6 21.46 Setting up libxau6:arm64 (1:1.0.9-1build5) ...
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#6 21.48 Setting up lto-disabled-list (24) ...
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#6 21.49 Setting up manpages (5.10-1ubuntu1) ...
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#6 21.50 Setting up unzip (6.0-26ubuntu3.2) ...
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#6 21.51 Setting up libbrotli1:arm64 (1.0.9-2build6) ...
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#6 21.52 Setting up libsqlite3-0:arm64 (3.37.2-2ubuntu0.5) ...
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#6 21.53 Setting up libsasl2-modules:arm64 (2.1.27+dfsg2-3ubuntu1.2) ...
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#6 21.54 Setting up binutils-common:arm64 (2.38-4ubuntu2.10) ...
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#6 21.55 Setting up libnghttp2-14:arm64 (1.43.0-1ubuntu0.2) ...
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#6 21.57 Setting up libdeflate0:arm64 (1.10-2) ...
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#6 21.58 Setting up linux-libc-dev:arm64 (5.15.0-161.171) ...
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#6 21.60 Setting up libctf-nobfd0:arm64 (2.38-4ubuntu2.10) ...
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#6 21.61 Setting up libnpth0:arm64 (1.6-3build2) ...
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#6 21.62 Setting up libassuan0:arm64 (2.5.5-1build1) ...
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#6 21.63 Setting up libgomp1:arm64 (12.3.0-1ubuntu1~22.04.2) ...
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#6 21.67 Setting up perl-modules-5.34 (5.34.0-3ubuntu1.5) ...
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#6 21.70 Setting up libldap-common (2.5.19+dfsg-0ubuntu0.22.04.1) ...
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#6 21.71 Setting up libjbig0:arm64 (2.1-3.1ubuntu0.22.04.1) ...
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#6 21.78 Setting up libfakeroot:arm64 (1.28-1ubuntu1) ...
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#6 21.80 Setting up libasan6:arm64 (11.4.0-1ubuntu1~22.04.2) ...
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#6 21.81 Setting up libsasl2-modules-db:arm64 (2.1.27+dfsg2-3ubuntu1.2) ...
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#6 21.82 Setting up fakeroot (1.28-1ubuntu1) ...
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#6 21.83 update-alternatives: using /usr/bin/fakeroot-sysv to provide /usr/bin/fakeroot (fakeroot) in auto mode
|
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#6 21.83 update-alternatives: warning: skip creation of /usr/share/man/man1/fakeroot.1.gz because associated file /usr/share/man/man1/fakeroot-sysv.1.gz (of link group fakeroot) doesn't exist
|
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#6 21.83 update-alternatives: warning: skip creation of /usr/share/man/man1/faked.1.gz because associated file /usr/share/man/man1/faked-sysv.1.gz (of link group fakeroot) doesn't exist
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#6 21.83 update-alternatives: warning: skip creation of /usr/share/man/es/man1/fakeroot.1.gz because associated file /usr/share/man/es/man1/fakeroot-sysv.1.gz (of link group fakeroot) doesn't exist
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#6 21.83 update-alternatives: warning: skip creation of /usr/share/man/es/man1/faked.1.gz because associated file /usr/share/man/es/man1/faked-sysv.1.gz (of link group fakeroot) doesn't exist
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#6 21.83 update-alternatives: warning: skip creation of /usr/share/man/fr/man1/fakeroot.1.gz because associated file /usr/share/man/fr/man1/fakeroot-sysv.1.gz (of link group fakeroot) doesn't exist
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#6 21.83 update-alternatives: warning: skip creation of /usr/share/man/fr/man1/faked.1.gz because associated file /usr/share/man/fr/man1/faked-sysv.1.gz (of link group fakeroot) doesn't exist
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#6 21.83 update-alternatives: warning: skip creation of /usr/share/man/sv/man1/fakeroot.1.gz because associated file /usr/share/man/sv/man1/fakeroot-sysv.1.gz (of link group fakeroot) doesn't exist
|
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#6 21.83 update-alternatives: warning: skip creation of /usr/share/man/sv/man1/faked.1.gz because associated file /usr/share/man/sv/man1/faked-sysv.1.gz (of link group fakeroot) doesn't exist
|
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#6 21.89 Setting up libtirpc-dev:arm64 (1.3.2-2ubuntu0.1) ...
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#6 21.90 Setting up rpcsvc-proto (1.4.2-0ubuntu6) ...
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#6 21.92 Setting up libx11-data (2:1.7.5-1ubuntu0.3) ...
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#6 21.94 Setting up make (4.3-4.1build1) ...
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#6 21.95 Setting up libmpfr6:arm64 (4.1.0-3build3) ...
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#6 21.98 Setting up gnupg-l10n (2.2.27-3ubuntu2.4) ...
|
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#6 21.99 Setting up librtmp1:arm64 (2.4+20151223.gitfa8646d.1-2build4) ...
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#6 22.01 Setting up xz-utils (5.2.5-2ubuntu1) ...
|
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#6 22.02 update-alternatives: using /usr/bin/xz to provide /usr/bin/lzma (lzma) in auto mode
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#6 22.02 update-alternatives: warning: skip creation of /usr/share/man/man1/lzma.1.gz because associated file /usr/share/man/man1/xz.1.gz (of link group lzma) doesn't exist
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#6 22.02 update-alternatives: warning: skip creation of /usr/share/man/man1/unlzma.1.gz because associated file /usr/share/man/man1/unxz.1.gz (of link group lzma) doesn't exist
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#6 22.02 update-alternatives: warning: skip creation of /usr/share/man/man1/lzcat.1.gz because associated file /usr/share/man/man1/xzcat.1.gz (of link group lzma) doesn't exist
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#6 22.02 update-alternatives: warning: skip creation of /usr/share/man/man1/lzmore.1.gz because associated file /usr/share/man/man1/xzmore.1.gz (of link group lzma) doesn't exist
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#6 22.02 update-alternatives: warning: skip creation of /usr/share/man/man1/lzless.1.gz because associated file /usr/share/man/man1/xzless.1.gz (of link group lzma) doesn't exist
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#6 22.02 update-alternatives: warning: skip creation of /usr/share/man/man1/lzdiff.1.gz because associated file /usr/share/man/man1/xzdiff.1.gz (of link group lzma) doesn't exist
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#6 22.02 update-alternatives: warning: skip creation of /usr/share/man/man1/lzcmp.1.gz because associated file /usr/share/man/man1/xzcmp.1.gz (of link group lzma) doesn't exist
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#6 22.02 update-alternatives: warning: skip creation of /usr/share/man/man1/lzgrep.1.gz because associated file /usr/share/man/man1/xzgrep.1.gz (of link group lzma) doesn't exist
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#6 22.02 update-alternatives: warning: skip creation of /usr/share/man/man1/lzegrep.1.gz because associated file /usr/share/man/man1/xzegrep.1.gz (of link group lzma) doesn't exist
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#6 22.02 update-alternatives: warning: skip creation of /usr/share/man/man1/lzfgrep.1.gz because associated file /usr/share/man/man1/xzfgrep.1.gz (of link group lzma) doesn't exist
|
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#6 22.03 Setting up libpng16-16:arm64 (1.6.37-3build5) ...
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#6 22.04 Setting up libmpc3:arm64 (1.2.1-2build1) ...
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#6 22.05 Setting up libatomic1:arm64 (12.3.0-1ubuntu1~22.04.2) ...
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#6 22.06 Setting up patch (2.7.6-7build2) ...
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#6 22.12 Setting up ucf (3.0043) ...
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#6 22.18 Setting up libjpeg-turbo8:arm64 (2.1.2-0ubuntu1) ...
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#6 22.20 Setting up libsasl2-2:arm64 (2.1.27+dfsg2-3ubuntu1.2) ...
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#6 22.24 Setting up libssh-4:arm64 (0.9.6-2ubuntu0.22.04.5) ...
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#6 22.27 Setting up libwebp7:arm64 (1.2.2-2ubuntu0.22.04.2) ...
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#6 22.27 Setting up libubsan1:arm64 (12.3.0-1ubuntu1~22.04.2) ...
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#6 22.28 Setting up libmd0:arm64 (1.0.4-1build1) ...
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#6 22.30 Setting up libnsl-dev:arm64 (1.3.0-2build2) ...
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#6 22.31 Setting up libhwasan0:arm64 (12.3.0-1ubuntu1~22.04.2) ...
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#6 22.32 Setting up libcrypt-dev:arm64 (1:4.4.27-1) ...
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#6 22.33 Setting up netbase (6.3) ...
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#6 22.35 Setting up libbinutils:arm64 (2.38-4ubuntu2.10) ...
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#6 22.36 Setting up libisl23:arm64 (0.24-2build1) ...
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#6 22.36 Setting up libc-dev-bin (2.35-0ubuntu3.11) ...
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#6 22.37 Setting up libbsd0:arm64 (0.11.5-1) ...
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#6 22.38 Setting up readline-common (8.1.2-1) ...
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#6 22.39 Setting up libcc1-0:arm64 (12.3.0-1ubuntu1~22.04.2) ...
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#6 22.39 Setting up liblocale-gettext-perl (1.07-4build3) ...
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#6 22.40 Setting up liblsan0:arm64 (12.3.0-1ubuntu1~22.04.2) ...
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#6 22.41 Setting up libitm1:arm64 (12.3.0-1ubuntu1~22.04.2) ...
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#6 22.41 Setting up libgdbm6:arm64 (1.23-1) ...
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#6 22.42 Setting up libtsan0:arm64 (11.4.0-1ubuntu1~22.04.2) ...
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#6 22.47 Setting up libctf0:arm64 (2.38-4ubuntu2.10) ...
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#6 22.49 Setting up libjpeg8:arm64 (8c-2ubuntu10) ...
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#6 22.50 Setting up pinentry-curses (1.1.1-1build2) ...
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#6 22.53 Setting up cpp-11 (11.4.0-1ubuntu1~22.04.2) ...
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#6 22.57 Setting up manpages-dev (5.10-1ubuntu1) ...
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#6 22.58 Setting up libxdmcp6:arm64 (1:1.1.3-0ubuntu5) ...
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#6 22.59 Setting up libxcb1:arm64 (1.14-3ubuntu3) ...
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#6 22.60 Setting up fontconfig-config (2.13.1-4.2ubuntu5) ...
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#6 22.76 Setting up libreadline8:arm64 (8.1.2-1) ...
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#6 22.78 Setting up binutils-aarch64-linux-gnu (2.38-4ubuntu2.10) ...
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#6 22.78 Setting up binutils (2.38-4ubuntu2.10) ...
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#6 22.79 Setting up libldap-2.5-0:arm64 (2.5.19+dfsg-0ubuntu0.22.04.1) ...
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#6 22.80 Setting up libfreetype6:arm64 (2.11.1+dfsg-1ubuntu0.3) ...
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#6 22.80 Setting up libgdbm-compat4:arm64 (1.23-1) ...
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#6 22.81 Setting up libgcc-11-dev:arm64 (11.4.0-1ubuntu1~22.04.2) ...
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#6 22.82 Setting up gcc-11 (11.4.0-1ubuntu1~22.04.2) ...
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#6 22.82 Setting up cpp (4:11.2.0-1ubuntu1) ...
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#6 22.83 Setting up gpgconf (2.2.27-3ubuntu2.4) ...
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#6 22.84 Setting up libcurl4:arm64 (7.81.0-1ubuntu1.21) ...
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#6 22.85 Setting up libc6-dev:arm64 (2.35-0ubuntu3.11) ...
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#6 22.85 Setting up libx11-6:arm64 (2:1.7.5-1ubuntu0.3) ...
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#6 22.86 Setting up libtiff5:arm64 (4.3.0-6ubuntu0.12) ...
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#6 22.88 Setting up curl (7.81.0-1ubuntu1.21) ...
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#6 22.92 Setting up libfontconfig1:arm64 (2.13.1-4.2ubuntu5) ...
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#6 22.93 Setting up gpg (2.2.27-3ubuntu2.4) ...
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#6 22.94 Setting up gnupg-utils (2.2.27-3ubuntu2.4) ...
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#6 22.95 Setting up libperl5.34:arm64 (5.34.0-3ubuntu1.5) ...
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#6 22.97 Setting up gpg-agent (2.2.27-3ubuntu2.4) ...
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#6 23.28 Setting up libxpm4:arm64 (1:3.5.12-1ubuntu0.22.04.2) ...
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#6 23.31 Setting up gpgsm (2.2.27-3ubuntu2.4) ...
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#6 23.32 Setting up gcc (4:11.2.0-1ubuntu1) ...
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#6 23.33 Setting up dirmngr (2.2.27-3ubuntu2.4) ...
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#6 23.42 Setting up perl (5.34.0-3ubuntu1.5) ...
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#6 23.45 Setting up libgd3:arm64 (2.3.0-2ubuntu2.3) ...
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#6 23.49 Setting up libdpkg-perl (1.21.1ubuntu2.6) ...
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#6 23.50 Setting up libstdc++-11-dev:arm64 (11.4.0-1ubuntu1~22.04.2) ...
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#6 23.51 Setting up gpg-wks-server (2.2.27-3ubuntu2.4) ...
|
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#6 23.51 Setting up zlib1g-dev:arm64 (1:1.2.11.dfsg-2ubuntu9.2) ...
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#6 23.52 Setting up libc-devtools (2.35-0ubuntu3.11) ...
|
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#6 23.53 Setting up gpg-wks-client (2.2.27-3ubuntu2.4) ...
|
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#6 23.54 Setting up g++-11 (11.4.0-1ubuntu1~22.04.2) ...
|
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#6 23.55 Setting up libfile-fcntllock-perl (0.22-3build7) ...
|
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#6 23.55 Setting up libalgorithm-diff-perl (1.201-1) ...
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#6 23.56 Setting up dpkg-dev (1.21.1ubuntu2.6) ...
|
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#6 23.57 Setting up g++ (4:11.2.0-1ubuntu1) ...
|
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#6 23.58 update-alternatives: using /usr/bin/g++ to provide /usr/bin/c++ (c++) in auto mode
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#6 23.58 update-alternatives: warning: skip creation of /usr/share/man/man1/c++.1.gz because associated file /usr/share/man/man1/g++.1.gz (of link group c++) doesn't exist
|
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#6 23.59 Setting up gnupg (2.2.27-3ubuntu2.4) ...
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#6 23.59 Setting up build-essential (12.9ubuntu3) ...
|
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#6 23.61 Setting up libalgorithm-diff-xs-perl (0.04-6build3) ...
|
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#6 23.61 Setting up libalgorithm-merge-perl (0.08-3) ...
|
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#6 23.62 Processing triggers for libc-bin (2.35-0ubuntu3.4) ...
|
|
#6 DONE 24.3s
|
|
|
|
#7 [rust-builder 3/6] RUN curl https://sh.rustup.rs -sSf | bash -s -- -y
|
|
#7 0.291 info: downloading installer
|
|
#7 1.674 error: $HOME differs from euid-obtained home directory: you may be using sudo
|
|
#7 1.674 error: $HOME directory: /home/jovyan
|
|
#7 1.674 error: euid-obtained home directory: /root
|
|
#7 1.718 info: profile set to 'default'
|
|
#7 1.718 info: default host triple is aarch64-unknown-linux-gnu
|
|
#7 1.718 info: syncing channel updates for 'stable-aarch64-unknown-linux-gnu'
|
|
#7 1.990 info: latest update on 2025-10-30, rust version 1.91.0 (f8297e351 2025-10-28)
|
|
#7 1.990 info: downloading component 'cargo'
|
|
#7 2.376 info: downloading component 'clippy'
|
|
#7 2.601 info: downloading component 'rust-docs'
|
|
#7 3.273 info: downloading component 'rust-std'
|
|
#7 4.157 info: downloading component 'rustc'
|
|
#7 6.280 info: downloading component 'rustfmt'
|
|
#7 6.449 info: installing component 'cargo'
|
|
#7 7.084 info: installing component 'clippy'
|
|
#7 7.398 info: installing component 'rust-docs'
|
|
#7 9.108 info: installing component 'rust-std'
|
|
#7 10.84 info: installing component 'rustc'
|
|
#7 14.30 info: installing component 'rustfmt'
|
|
#7 14.59 info: default toolchain set to 'stable-aarch64-unknown-linux-gnu'
|
|
#7 14.59
|
|
#7 14.59 stable-aarch64-unknown-linux-gnu installed - rustc 1.91.0 (f8297e351 2025-10-28)
|
|
#7 14.59
|
|
#7 14.59
|
|
#7 14.59 Rust is installed now. Great!
|
|
#7 14.59
|
|
#7 14.59 To get started you may need to restart your current shell.
|
|
#7 14.59 This would reload your PATH environment variable to include
|
|
#7 14.59 Cargo's bin directory ($HOME/.cargo/bin).
|
|
#7 14.59
|
|
#7 14.59 To configure your current shell, you need to source
|
|
#7 14.59 the corresponding env file under $HOME/.cargo.
|
|
#7 14.59
|
|
#7 14.59 This is usually done by running one of the following (note the leading DOT):
|
|
#7 14.59 . "$HOME/.cargo/env" # For sh/bash/zsh/ash/dash/pdksh
|
|
#7 14.59 source "$HOME/.cargo/env.fish" # For fish
|
|
#7 14.59 source $"($nu.home-path)/.cargo/env.nu" # For nushell
|
|
#7 DONE 17.0s
|
|
|
|
#8 [rust-builder 4/6] RUN . /home/jovyan/.cargo/env && cargo install csvlens
|
|
#8 0.135 Updating crates.io index
|
|
#8 0.844 Downloading crates ...
|
|
#8 1.045 Downloaded csvlens v0.14.0
|
|
#8 1.110 Installing csvlens v0.14.0
|
|
#8 1.121 Updating crates.io index
|
|
#8 2.654 Locking 222 packages to latest compatible versions
|
|
#8 2.656 Adding arrow v56.2.0 (available: v57.0.0)
|
|
#8 2.660 Adding crossterm v0.28.1 (available: v0.29.0)
|
|
#8 2.666 Adding qsv-sniffer v0.11.0 (available: v0.12.2)
|
|
#8 2.675 Adding tui-input v0.13.0 (available: v0.14.0)
|
|
#8 2.675 Adding unicode-width v0.2.0 (available: v0.2.2)
|
|
#8 2.678 Downloading crates ...
|
|
#8 2.774 Downloaded clap_lex v0.7.6
|
|
#8 2.775 Downloaded const-random v0.1.18
|
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#8 2.776 Downloaded anstyle-parse v0.2.7
|
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#8 2.778 Downloaded anstream v0.6.21
|
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#8 2.803 Downloaded crunchy v0.2.4
|
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#8 2.803 Downloaded const-random-macro v0.1.16
|
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#8 2.805 Downloaded either v1.15.0
|
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#8 2.807 Downloaded quote v1.0.41
|
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#8 2.809 Downloaded anstyle-query v1.1.4
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#8 2.816 Downloaded ansi-to-tui v7.0.0
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#8 2.835 Downloaded anstyle v1.0.13
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#8 2.837 Downloaded is_terminal_polyfill v1.70.2
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#8 2.838 Downloaded equivalent v1.0.2
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#8 2.844 Downloaded darling_core v0.20.11
|
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#8 2.848 Downloaded ident_case v1.0.1
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#8 2.849 Downloaded fixedbitset v0.4.2
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#8 2.850 Downloaded darling_macro v0.20.11
|
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#8 2.852 Downloaded atoi v2.0.0
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#8 2.853 Downloaded autocfg v1.5.0
|
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#8 2.855 Downloaded arrow-csv v56.2.0
|
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#8 2.864 Downloaded shlex v1.3.0
|
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#8 2.867 Downloaded tiny-keccak v2.0.2
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#8 2.869 Downloaded num-traits v0.2.19
|
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#8 2.871 Downloaded num-integer v0.1.46
|
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#8 2.872 Downloaded getrandom v0.2.16
|
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#8 2.874 Downloaded fastrand v2.3.0
|
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#8 2.875 Downloaded os_pipe v1.2.3
|
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#8 2.876 Downloaded arboard v3.6.1
|
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#8 2.878 Downloaded thiserror v2.0.17
|
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#8 2.882 Downloaded num v0.4.3
|
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#8 2.883 Downloaded foldhash v0.1.5
|
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#8 2.883 Downloaded csv-core v0.1.13
|
|
#8 2.885 Downloaded darling v0.20.11
|
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#8 2.887 Downloaded lock_api v0.4.14
|
|
#8 2.888 Downloaded downcast-rs v1.2.1
|
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#8 2.889 Downloaded num-complex v0.4.6
|
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#8 2.890 Downloaded clap_derive v4.5.49
|
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#8 2.892 Downloaded bytecount v0.6.9
|
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#8 2.893 Downloaded arrow-data v56.2.0
|
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#8 2.895 Downloaded arrow-ord v56.2.0
|
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#8 2.897 Downloaded allocator-api2 v0.2.21
|
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#8 2.899 Downloaded arrow-string v56.2.0
|
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#8 2.900 Downloaded arrow-row v56.2.0
|
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#8 2.901 Downloaded num-iter v0.1.45
|
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#8 2.902 Downloaded num-rational v0.4.2
|
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#8 2.903 Downloaded find-msvc-tools v0.1.4
|
|
#8 2.904 Downloaded log v0.4.28
|
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#8 2.906 Downloaded clap v4.5.51
|
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#8 2.910 Downloaded ahash v0.8.12
|
|
#8 2.912 Downloaded iana-time-zone v0.1.64
|
|
#8 2.914 Downloaded lexical-parse-integer v1.0.6
|
|
#8 2.915 Downloaded arrow-arith v56.2.0
|
|
#8 2.916 Downloaded parking_lot_core v0.9.12
|
|
#8 2.918 Downloaded arrow-schema v56.2.0
|
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#8 2.920 Downloaded getrandom v0.3.4
|
|
#8 2.922 Downloaded fast-float2 v0.2.3
|
|
#8 2.923 Downloaded lexical-core v1.0.6
|
|
#8 2.924 Downloaded base64 v0.22.1
|
|
#8 2.927 Downloaded anyhow v1.0.100
|
|
#8 2.929 Downloaded arrow v56.2.0
|
|
#8 2.932 Downloaded lexical-write-integer v1.0.6
|
|
#8 2.934 Downloaded compact_str v0.8.1
|
|
#8 2.936 Downloaded arrow-buffer v56.2.0
|
|
#8 2.938 Downloaded arrow-select v56.2.0
|
|
#8 2.940 Downloaded half v2.7.1
|
|
#8 2.942 Downloaded bitflags v2.10.0
|
|
#8 2.944 Downloaded once_cell v1.21.3
|
|
#8 2.946 Downloaded bytes v1.10.1
|
|
#8 2.948 Downloaded static_assertions v1.1.0
|
|
#8 2.949 Downloaded arrow-cast v56.2.0
|
|
#8 2.952 Downloaded lru v0.12.5
|
|
#8 2.952 Downloaded itoa v1.0.15
|
|
#8 2.953 Downloaded instability v0.3.9
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#9 [rust-builder 5/6] RUN TEMP=. curl -L https://raw.githubusercontent.com/metabarcoding/obitools4/master/install_obitools.sh | bash -s -- --install-dir /home/jovyan/obitools-build && cp /home/jovyan/obitools-build/bin/* /usr/local/bin
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#9 80.28 inflating: obitools4-master/pkg/obitools/obitaxonomy/obitaxonomy.go
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#9 80.28 inflating: obitools4-master/pkg/obitools/obitaxonomy/options.go
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#9 80.28 creating: obitools4-master/pkg/obitools/obiuniq/
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#9 80.28 inflating: obitools4-master/pkg/obitools/obiuniq/options.go
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#9 80.28 inflating: obitools4-master/pkg/obitools/obiuniq/unique.go
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#9 80.28 creating: obitools4-master/pkg/obiutils/
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#9 80.28 inflating: obitools4-master/pkg/obiutils/abs.go
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#9 80.28 inflating: obitools4-master/pkg/obiutils/abs_test.go
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#9 80.28 inflating: obitools4-master/pkg/obiutils/array.go
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#9 80.28 inflating: obitools4-master/pkg/obiutils/array_test.go
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#9 80.28 inflating: obitools4-master/pkg/obiutils/bytes.go
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#9 80.28 inflating: obitools4-master/pkg/obiutils/bytes_test.go
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#9 80.28 inflating: obitools4-master/pkg/obiutils/cast_interface.go
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#9 80.28 inflating: obitools4-master/pkg/obiutils/counter.go
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#9 80.28 inflating: obitools4-master/pkg/obiutils/download.go
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#9 80.28 inflating: obitools4-master/pkg/obiutils/goutils.go
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#9 80.28 inflating: obitools4-master/pkg/obiutils/gzipfile.go
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#9 80.28 inflating: obitools4-master/pkg/obiutils/mimetypes.go
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#9 80.28 inflating: obitools4-master/pkg/obiutils/minmax.go
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#9 80.28 inflating: obitools4-master/pkg/obiutils/path.go
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#9 80.28 inflating: obitools4-master/pkg/obiutils/path_test.go
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#9 80.28 inflating: obitools4-master/pkg/obiutils/pipe.go
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#9 80.28 inflating: obitools4-master/pkg/obiutils/ranks.go
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#9 80.28 inflating: obitools4-master/pkg/obiutils/set.go
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#9 80.28 inflating: obitools4-master/pkg/obiutils/set_test.go
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#9 80.28 inflating: obitools4-master/pkg/obiutils/slices.go
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#9 80.28 inflating: obitools4-master/pkg/obiutils/strings.go
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#9 80.28 inflating: obitools4-master/pkg/obiutils/tar.go
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#9 80.28 inflating: obitools4-master/pkg/obiutils/unsafe.go
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#9 80.28 inflating: obitools4-master/pkg/obiutils/xopen.go
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#9 80.28 inflating: obitools4-master/pkg/obiutils/xopen_test.go
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#9 80.28 creating: obitools4-master/public/
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#9 80.28 extracting: obitools4-master/public/.gitkeep
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#9 80.28 inflating: obitools4-master/public/OBITools-V4.pdf
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#9 80.28 inflating: obitools4-master/public/annexes.html
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#9 80.28 inflating: obitools4-master/public/commands.html
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#9 80.28 creating: obitools4-master/public/commands_files/
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#9 80.28 creating: obitools4-master/public/commands_files/figure-html/
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#9 80.28 inflating: obitools4-master/public/commands_files/figure-html/unnamed-chunk-1-1.png
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#9 80.28 inflating: obitools4-master/public/index.html
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#9 80.28 inflating: obitools4-master/public/intro.html
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#9 80.28 inflating: obitools4-master/public/library.html
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#9 80.28 inflating: obitools4-master/public/references.html
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#9 80.28 inflating: obitools4-master/public/search.json
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#9 80.28 creating: obitools4-master/public/site_libs/
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#9 80.28 creating: obitools4-master/public/site_libs/bootstrap/
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#9 80.28 inflating: obitools4-master/public/site_libs/bootstrap/bootstrap-icons.css
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#9 80.28 inflating: obitools4-master/public/site_libs/bootstrap/bootstrap-icons.woff
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#9 80.29 inflating: obitools4-master/public/site_libs/bootstrap/bootstrap.min.css
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#9 80.29 inflating: obitools4-master/public/site_libs/bootstrap/bootstrap.min.js
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#9 80.29 creating: obitools4-master/public/site_libs/clipboard/
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#9 80.29 inflating: obitools4-master/public/site_libs/clipboard/clipboard.min.js
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#9 80.29 creating: obitools4-master/public/site_libs/quarto-html/
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#9 80.29 inflating: obitools4-master/public/site_libs/quarto-html/anchor.min.js
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#9 80.29 inflating: obitools4-master/public/site_libs/quarto-html/popper.min.js
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#9 80.29 inflating: obitools4-master/public/site_libs/quarto-html/quarto-syntax-highlighting.css
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#9 80.29 inflating: obitools4-master/public/site_libs/quarto-html/quarto.js
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#9 80.29 inflating: obitools4-master/public/site_libs/quarto-html/tippy.css
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#9 80.29 inflating: obitools4-master/public/site_libs/quarto-html/tippy.umd.min.js
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#9 80.29 creating: obitools4-master/public/site_libs/quarto-nav/
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#9 80.29 inflating: obitools4-master/public/site_libs/quarto-nav/headroom.min.js
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#9 80.29 inflating: obitools4-master/public/site_libs/quarto-nav/quarto-nav.js
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#9 80.29 creating: obitools4-master/public/site_libs/quarto-search/
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#9 80.29 inflating: obitools4-master/public/site_libs/quarto-search/autocomplete.umd.js
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#9 80.29 inflating: obitools4-master/public/site_libs/quarto-search/fuse.min.js
|
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#9 80.29 inflating: obitools4-master/public/site_libs/quarto-search/quarto-search.js
|
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#9 80.29 inflating: obitools4-master/public/tutorial.html
|
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#9 80.29 creating: obitools4-master/public/tutorial_files/
|
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#9 80.29 creating: obitools4-master/public/tutorial_files/figure-html/
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#9 80.29 inflating: obitools4-master/public/tutorial_files/figure-html/unnamed-chunk-10-1.png
|
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#9 80.29 inflating: obitools4-master/public/tutorial_files/figure-html/unnamed-chunk-9-1.png
|
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#9 80.29 extracting: obitools4-master/public/wolf_diet.tgz
|
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#9 80.60 creating: obitools4-master/sample/
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#9 80.60 inflating: obitools4-master/sample/AY189646
|
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#9 80.60 inflating: obitools4-master/sample/FJ465692
|
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#9 80.60 extracting: obitools4-master/sample/wolf_F.fastq.gz
|
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#9 80.61 extracting: obitools4-master/sample/wolf_R.fastq.gz
|
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#9 80.62 inflating: obitools4-master/sample/wolf_diet_ngsfilter.txt
|
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#9 80.62 Install OBITOOLS from : https://github.com/metabarcoding/obitools4/archive/refs/heads/master.zip
|
|
#9 80.63 installing pre-push...
|
|
#9 80.63 mkdir -p build
|
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#9 80.63 - Building obitool obiannotate...Done.
|
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#9 99.38 - Building obitool obiclean...Done.
|
|
#9 100.8 - Building obitool obicleandb...Done.
|
|
#9 102.0 - Building obitool obicomplement...Done.
|
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#9 103.1 - Building obitool obiconsensus...Done.
|
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#9 104.3 - Building obitool obiconvert...Done.
|
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#9 105.4 - Building obitool obicount...Done.
|
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#9 106.6 - Building obitool obicsv...Done.
|
|
#9 107.7 - Building obitool obidemerge...Done.
|
|
#9 108.9 - Building obitool obidistribute...Done.
|
|
#9 110.0 - Building obitool obigrep...Done.
|
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#9 111.1 - Building obitool obijoin...Done.
|
|
#9 112.3 - Building obitool obikmermatch...Done.
|
|
#9 113.5 - Building obitool obikmersimcount...Done.
|
|
#9 114.6 - Building obitool obilandmark...Done.
|
|
#9 115.8 - Building obitool obimatrix...Done.
|
|
#9 116.9 - Building obitool obimicrosat...Done.
|
|
#9 118.6 - Building obitool obimultiplex...Done.
|
|
#9 119.7 - Building obitool obipairing...Done.
|
|
#9 120.8 - Building obitool obipcr...Done.
|
|
#9 122.0 - Building obitool obireffamidx...Done.
|
|
#9 123.2 - Building obitool obirefidx...Done.
|
|
#9 124.3 - Building obitool obiscript...Done.
|
|
#9 126.2 - Building obitool obisplit...Done.
|
|
#9 127.4 - Building obitool obisummary...Done.
|
|
#9 128.9 - Building obitool obitag...Done.
|
|
#9 130.0 - Building obitool obitagpcr...Done.
|
|
#9 131.2 - Building obitool obitaxonomy...Done.
|
|
#9 132.3 - Building obitool obiuniq...Done.
|
|
#9 134.0 ~
|
|
#9 DONE 135.2s
|
|
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|
#10 [rust-builder 6/6] RUN ls -l /usr/local/bin
|
|
#10 0.145 total 558880
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#10 0.145 drwxr-xr-x 1 root root 0 Oct 20 2023 before-notebook.d
|
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#10 0.145 -rwxr-xr-x 1 root root 1043 Aug 19 2023 fix-permissions
|
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#10 0.145 -rwxr-xr-x 1 root root 19803400 Nov 5 09:58 obiannotate
|
|
#10 0.145 -rwxr-xr-x 1 root root 20079416 Nov 5 09:58 obiclean
|
|
#10 0.145 -rwxr-xr-x 1 root root 19765616 Nov 5 09:58 obicleandb
|
|
#10 0.145 -rwxr-xr-x 1 root root 19562704 Nov 5 09:58 obicomplement
|
|
#10 0.145 -rwxr-xr-x 1 root root 20263896 Nov 5 09:58 obiconsensus
|
|
#10 0.145 -rwxr-xr-x 1 root root 19562760 Nov 5 09:58 obiconvert
|
|
#10 0.145 -rwxr-xr-x 1 root root 19288648 Nov 5 09:58 obicount
|
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#10 0.145 -rwxr-xr-x 1 root root 19568056 Nov 5 09:58 obicsv
|
|
#10 0.145 -rwxr-xr-x 1 root root 19569688 Nov 5 09:58 obidemerge
|
|
#10 0.145 -rwxr-xr-x 1 root root 19581400 Nov 5 09:58 obidistribute
|
|
#10 0.145 -rwxr-xr-x 1 root root 19711024 Nov 5 09:58 obigrep
|
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#10 0.145 -rwxr-xr-x 1 root root 19600488 Nov 5 09:58 obijoin
|
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#10 0.145 -rwxr-xr-x 1 root root 19788488 Nov 5 09:58 obikmermatch
|
|
#10 0.145 -rwxr-xr-x 1 root root 19721640 Nov 5 09:58 obikmersimcount
|
|
#10 0.145 -rwxr-xr-x 1 root root 19661496 Nov 5 09:58 obilandmark
|
|
#10 0.145 -rwxr-xr-x 1 root root 19359192 Nov 5 09:58 obimatrix
|
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#10 0.145 -rwxr-xr-x 1 root root 19932464 Nov 5 09:58 obimicrosat
|
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#10 0.145 -rwxr-xr-x 1 root root 19718320 Nov 5 09:58 obimultiplex
|
|
#10 0.145 -rwxr-xr-x 1 root root 19639328 Nov 5 09:58 obipairing
|
|
#10 0.145 -rwxr-xr-x 1 root root 19638176 Nov 5 09:58 obipcr
|
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#10 0.145 -rwxr-xr-x 1 root root 19649392 Nov 5 09:58 obireffamidx
|
|
#10 0.145 -rwxr-xr-x 1 root root 19606240 Nov 5 09:58 obirefidx
|
|
#10 0.145 -rwxr-xr-x 1 root root 20809824 Nov 5 09:58 obiscript
|
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#10 0.145 -rwxr-xr-x 1 root root 19624912 Nov 5 09:58 obisplit
|
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#10 0.145 -rwxr-xr-x 1 root root 19923272 Nov 5 09:58 obisummary
|
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#10 0.145 -rwxr-xr-x 1 root root 19661632 Nov 5 09:58 obitag
|
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#10 0.145 -rwxr-xr-x 1 root root 19793288 Nov 5 09:58 obitagpcr
|
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#10 0.145 -rwxr-xr-x 1 root root 19607312 Nov 5 09:58 obitaxonomy
|
|
#10 0.145 -rwxr-xr-x 1 root root 19692664 Nov 5 09:58 obiuniq
|
|
#10 0.145 -rwxr-xr-x 1 root root 1331 Sep 4 2023 run-hooks.sh
|
|
#10 0.145 drwxr-xr-x 1 root root 0 Oct 20 2023 start-notebook.d
|
|
#10 0.145 -rwxr-xr-x 1 root root 1471 Oct 17 2023 start-notebook.py
|
|
#10 0.145 -rwxr-xr-x 1 root root 152 Oct 17 2023 start-notebook.sh
|
|
#10 0.145 -rwxr-xr-x 1 root root 11624 Aug 25 2023 start.sh
|
|
#10 0.145 -rwxr-xr-x 1 root root 726 Oct 17 2023 start-singleuser.py
|
|
#10 0.145 -rwxr-xr-x 1 root root 158 Oct 17 2023 start-singleuser.sh
|
|
#10 DONE 0.2s
|
|
|
|
#11 [stage-1 8/12] RUN chmod +x /usr/local/bin/start-notebook.sh
|
|
#11 CACHED
|
|
|
|
#12 [stage-1 2/12] RUN apt-get update && apt-get install -y r-base libcurl4-openssl-dev libssl-dev libxml2-dev curl texlive-xetex texlive-fonts-recommended texlive-plain-generic ruby ruby-dev vim nano && apt-get clean && rm -rf /var/lib/apt/lists/* /tmp/* /var/tmp/*
|
|
#12 CACHED
|
|
|
|
#13 [stage-1 3/12] RUN R -e "install.packages(c('IRkernel','tidyverse','vegan','ade4','BiocManager','remotes'), repos='http://cran.rstudio.com/')" && R -e "BiocManager::install('biomformat')" && R -e "remotes::install_github('metabaRfactory/metabaR')" && R -e "IRkernel::installspec(user = FALSE)" && rm -rf /tmp/Rtmp*
|
|
#13 CACHED
|
|
|
|
#14 [stage-1 4/12] RUN pip install --no-cache-dir bash_kernel csvkit && python -m bash_kernel.install --sys-prefix
|
|
#14 CACHED
|
|
|
|
#15 [stage-1 5/12] RUN gem install youplot
|
|
#15 CACHED
|
|
|
|
#16 [stage-1 6/12] RUN mkdir -p /home/jovyan/.local/share/jupyter && chown -R 1000:100 /home/jovyan
|
|
#16 CACHED
|
|
|
|
#17 [stage-1 7/12] COPY start-notebook.sh /usr/local/bin/start-notebook.sh
|
|
#17 CACHED
|
|
|
|
#18 [stage-1 9/12] COPY --from=rust-builder /home/jovyan/.cargo/bin/csvlens /usr/local/bin/
|
|
#18 CACHED
|
|
|
|
#19 [stage-1 10/12] COPY --from=rust-builder /usr/local/bin/* /usr/local/bin/
|
|
#19 DONE 0.1s
|
|
|
|
#20 [stage-1 11/12] RUN ls -l /usr/local/bin/*
|
|
#20 0.190 -rwxr-xr-x 1 root root 10339888 Nov 5 07:37 /usr/local/bin/csvlens
|
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#20 0.190 -rwxr-xr-x 1 root root 1043 Aug 19 2023 /usr/local/bin/fix-permissions
|
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#20 0.190 -rwxr-xr-x 1 root root 19803400 Nov 5 09:58 /usr/local/bin/obiannotate
|
|
#20 0.190 -rwxr-xr-x 1 root root 20079416 Nov 5 09:58 /usr/local/bin/obiclean
|
|
#20 0.190 -rwxr-xr-x 1 root root 19765616 Nov 5 09:58 /usr/local/bin/obicleandb
|
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#20 0.190 -rwxr-xr-x 1 root root 19562704 Nov 5 09:58 /usr/local/bin/obicomplement
|
|
#20 0.190 -rwxr-xr-x 1 root root 20263896 Nov 5 09:58 /usr/local/bin/obiconsensus
|
|
#20 0.190 -rwxr-xr-x 1 root root 19562760 Nov 5 09:58 /usr/local/bin/obiconvert
|
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#20 0.190 -rwxr-xr-x 1 root root 19288648 Nov 5 09:58 /usr/local/bin/obicount
|
|
#20 0.190 -rwxr-xr-x 1 root root 19568056 Nov 5 09:58 /usr/local/bin/obicsv
|
|
#20 0.190 -rwxr-xr-x 1 root root 19569688 Nov 5 09:58 /usr/local/bin/obidemerge
|
|
#20 0.190 -rwxr-xr-x 1 root root 19581400 Nov 5 09:58 /usr/local/bin/obidistribute
|
|
#20 0.190 -rwxr-xr-x 1 root root 19711024 Nov 5 09:58 /usr/local/bin/obigrep
|
|
#20 0.190 -rwxr-xr-x 1 root root 19600488 Nov 5 09:58 /usr/local/bin/obijoin
|
|
#20 0.190 -rwxr-xr-x 1 root root 19788488 Nov 5 09:58 /usr/local/bin/obikmermatch
|
|
#20 0.190 -rwxr-xr-x 1 root root 19721640 Nov 5 09:58 /usr/local/bin/obikmersimcount
|
|
#20 0.190 -rwxr-xr-x 1 root root 19661496 Nov 5 09:58 /usr/local/bin/obilandmark
|
|
#20 0.190 -rwxr-xr-x 1 root root 19359192 Nov 5 09:58 /usr/local/bin/obimatrix
|
|
#20 0.190 -rwxr-xr-x 1 root root 19932464 Nov 5 09:58 /usr/local/bin/obimicrosat
|
|
#20 0.190 -rwxr-xr-x 1 root root 19718320 Nov 5 09:58 /usr/local/bin/obimultiplex
|
|
#20 0.190 -rwxr-xr-x 1 root root 19639328 Nov 5 09:58 /usr/local/bin/obipairing
|
|
#20 0.190 -rwxr-xr-x 1 root root 19638176 Nov 5 09:58 /usr/local/bin/obipcr
|
|
#20 0.190 -rwxr-xr-x 1 root root 19649392 Nov 5 09:58 /usr/local/bin/obireffamidx
|
|
#20 0.190 -rwxr-xr-x 1 root root 19606240 Nov 5 09:58 /usr/local/bin/obirefidx
|
|
#20 0.190 -rwxr-xr-x 1 root root 20809824 Nov 5 09:58 /usr/local/bin/obiscript
|
|
#20 0.190 -rwxr-xr-x 1 root root 19624912 Nov 5 09:58 /usr/local/bin/obisplit
|
|
#20 0.190 -rwxr-xr-x 1 root root 19923272 Nov 5 09:58 /usr/local/bin/obisummary
|
|
#20 0.190 -rwxr-xr-x 1 root root 19661632 Nov 5 09:58 /usr/local/bin/obitag
|
|
#20 0.190 -rwxr-xr-x 1 root root 19793288 Nov 5 09:58 /usr/local/bin/obitagpcr
|
|
#20 0.190 -rwxr-xr-x 1 root root 19607312 Nov 5 09:58 /usr/local/bin/obitaxonomy
|
|
#20 0.190 -rwxr-xr-x 1 root root 19692664 Nov 5 09:58 /usr/local/bin/obiuniq
|
|
#20 0.190 -rwxr-xr-x 1 root root 1331 Sep 4 2023 /usr/local/bin/run-hooks.sh
|
|
#20 0.190 -rwxr-xr-x 1 root root 1471 Oct 17 2023 /usr/local/bin/start-notebook.py
|
|
#20 0.190 -rwxr-xr-x 1 root root 152 Oct 17 2023 /usr/local/bin/start-notebook.sh
|
|
#20 0.190 -rwxr-xr-x 1 root root 11624 Aug 25 2023 /usr/local/bin/start.sh
|
|
#20 0.190 -rwxr-xr-x 1 root root 726 Oct 17 2023 /usr/local/bin/start-singleuser.py
|
|
#20 0.190 -rwxr-xr-x 1 root root 158 Oct 17 2023 /usr/local/bin/start-singleuser.sh
|
|
#20 0.190 -rwxr-xr-x 1 root root 544 Nov 5 07:47 /usr/local/bin/uplot
|
|
#20 0.190 -rwxr-xr-x 1 root root 548 Nov 5 07:47 /usr/local/bin/youplot
|
|
#20 0.190
|
|
#20 0.190 /usr/local/bin/before-notebook.d:
|
|
#20 0.190 total 0
|
|
#20 0.190
|
|
#20 0.190 /usr/local/bin/start-notebook.d:
|
|
#20 0.190 total 0
|
|
#20 DONE 0.2s
|
|
|
|
#21 [stage-1 12/12] WORKDIR /home/jovyan/work
|
|
#21 DONE 0.1s
|
|
|
|
#22 exporting to image
|
|
#22 exporting layers
|
|
#22 exporting layers 1.2s done
|
|
#22 writing image sha256:16ef1b3fea82b9d4fd8e3c4f79f060d98022c2a502b1c3e49ce9e5421cdc2bd4 done
|
|
#22 naming to docker.io/library/jupyterhub-student:latest done
|
|
#22 DONE 1.3s
|