Eric Coissac
15faada234
- Replace monolithic build flow with three operating modes: pull (default), local-build, publish - Add version.txt for image tagging and multi-platform builds via buildx (--publish) - Switch builder to tarball-based Quarto install for better cross-platform reliability - Update docker-compose.yml and jupyterhub_config.py to use environment variables for image names, defaulting to registry images - Refactor start-jupyterhub.sh: modular functions for image management, clearer flag handling and error messages - Simplify Readme.md with structured tables instead of dense paragraphs, clarify data persistence and R package workflow
120 lines
3.3 KiB
YAML
120 lines
3.3 KiB
YAML
services:
|
|
jupyterhub:
|
|
container_name: jupyterhub
|
|
hostname: jupyterhub
|
|
image: ${HUB_IMAGE:-registry.metabarcoding.org/metabarschool/obijupyterhub-hub:latest}
|
|
expose:
|
|
- "8000"
|
|
volumes:
|
|
# Access to Docker socket to spawn student containers
|
|
- /var/run/docker.sock:/var/run/docker.sock
|
|
# JupyterHub database persistence
|
|
- data:/srv/jupyterhub
|
|
# Mount the parent volumes directory to access users/, shared/, course/
|
|
- ../jupyterhub_volumes:/volumes
|
|
# Mount config file directly (for easy modifications)
|
|
- ./jupyterhub_config.py:/srv/jupyterhub/jupyterhub_config.py:ro
|
|
networks:
|
|
- jupyterhub-network
|
|
restart: unless-stopped
|
|
environment:
|
|
# Docker image used for student containers (read by jupyterhub_config.py)
|
|
STUDENT_IMAGE: ${STUDENT_IMAGE:-registry.metabarcoding.org/metabarschool/obijupyterhub-student:latest}
|
|
# Shared password for all students
|
|
JUPYTERHUB_PASSWORD: metabar2025
|
|
# Admin password (for installing R packages)
|
|
JUPYTERHUB_ADMIN_PASSWORD: admin2025
|
|
# Optional environment variables
|
|
DOCKER_NOTEBOOK_DIR: /home/jovyan/work
|
|
# Use PWD to get absolute path relative to docker-compose.yml location
|
|
HOST_VOLUMES_PATH: ${PWD}/../jupyterhub_volumes
|
|
|
|
# ---------- Nginx ----------
|
|
|
|
caddy:
|
|
container_name: jupyterhub-caddy
|
|
hostname: jupytercaddy
|
|
image: caddy:latest
|
|
ports:
|
|
- "8888:80"
|
|
volumes:
|
|
- ./Caddyfile:/etc/caddy/Caddyfile
|
|
- caddy-data:/data
|
|
- caddy-config:/config
|
|
- web:/srv # Votre app
|
|
networks:
|
|
- jupyterhub-network
|
|
restart: unless-stopped
|
|
|
|
# ---------- SFTPGo ----------
|
|
sftpgo:
|
|
image: drakkan/sftpgo:latest
|
|
container_name: jupyterhub-sftpgo
|
|
hostname: jupytersftp
|
|
command: sftpgo serve --loaddata-from /config/local_config.json --loaddata-clean
|
|
expose:
|
|
- "2022"
|
|
- "8080"
|
|
environment:
|
|
SFTPGO_DATA_PROVIDER__CREATE_DEFAULT_ADMIN: true
|
|
SFTPGO_DEFAULT_ADMIN_USERNAME: admin
|
|
SFTPGO_DEFAULT_ADMIN_PASSWORD: admin2025
|
|
SFTPGO_HTTPD__BINDINGS__0__CLIENT_IP_PROXY_HEADER: X-Real-IP
|
|
volumes:
|
|
- shared:/volumes/shared
|
|
- course:/volumes/course
|
|
- web:/volumes/web
|
|
- ./sftpgo_config.json:/config/local_config.json:ro
|
|
|
|
networks:
|
|
- jupyterhub-network
|
|
restart: unless-stopped
|
|
|
|
networks:
|
|
jupyterhub-network:
|
|
name: jupyterhub-network
|
|
driver: bridge
|
|
|
|
volumes:
|
|
data:
|
|
driver: local
|
|
driver_opts:
|
|
type: none
|
|
o: bind
|
|
device: ../jupyterhub_volumes/jupyterhub
|
|
shared:
|
|
driver: local
|
|
driver_opts:
|
|
type: none
|
|
o: bind
|
|
device: ../jupyterhub_volumes/shared
|
|
course:
|
|
driver: local
|
|
driver_opts:
|
|
type: none
|
|
o: bind
|
|
device: ../jupyterhub_volumes/course
|
|
web:
|
|
driver: local
|
|
driver_opts:
|
|
type: none
|
|
o: bind
|
|
device: ../jupyterhub_volumes/web
|
|
caddy-data:
|
|
driver: local
|
|
driver_opts:
|
|
type: none
|
|
o: bind
|
|
device: ../jupyterhub_volumes/caddy/data
|
|
caddy-config:
|
|
driver: local
|
|
driver_opts:
|
|
type: none
|
|
o: bind
|
|
device: ../jupyterhub_volumes/caddy/config
|
|
users:
|
|
driver: local
|
|
driver_opts:
|
|
type: none
|
|
o: bind
|
|
device: ../jupyterhub_volumes/users |