OBIJupyterHub/jupyterhub_volumes/web/obidoc/docs/index.xml

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      <title>About</title>
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      <description>&lt;h2 id=&#34;what-are-obitools4&#34;&gt;&#xA;  What are OBITools4?&#xA;  &lt;a class=&#34;anchor&#34; href=&#34;#what-are-obitools4&#34;&gt;#&lt;/a&gt;&#xA;&lt;/h2&gt;&#xA;&lt;p&gt;The development of &lt;abbr title=&#34;A set of unix command line tools for manipulating DNA metabarcoding data&#34;&gt;OBITools&lt;/abbr&gt;&#xA;         began at &#xA;        &lt;a href=&#34;https://leca.osug.fr&#34;&gt;&lt;abbr title=&#34;LECA: Laboratoire d&amp;#39;écologie Alpine - Laboratory for Alpine Ecology&#34;&gt;LECA&lt;/abbr&gt;&#xA;    &#xA;        &lt;/a&gt; (&#xA;  &lt;a href=&#34;https://www.univ-grenoble-alpes.fr/&#34;&gt;University of Grenoble&lt;/a&gt;) in the early 2000s, at the same time as the development of DNA metabarcoding methods in the same laboratory. The idea behind the OBITools project was to provide a set of UNIX command-line tools that mimic standard UNIX shell commands such as &lt;code&gt;grep&lt;/code&gt;, &lt;code&gt;uniq&lt;/code&gt; or &lt;code&gt;wc&lt;/code&gt;, but which work on DNA sequence files. Unlike standard UNIX tools, where the processing unit is a line of text, with OBITools the processing unit is a sequence record. In addition, some commands implementing algorithms specific to the processing of DNA metabarcoding data have been added, making &lt;abbr title=&#34;A set of unix command line tools for manipulating DNA metabarcoding data&#34;&gt;OBITools&lt;/abbr&gt;&#xA;         one of the sequence processing tools widely used on UNIX-like systems, suitable for the analysis of DNA metabarcoding data.&lt;/p&gt;</description>
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