74 lines
2.0 KiB
Bash
74 lines
2.0 KiB
Bash
#!/bin/bash
|
||
|
||
# Script to install R packages in the course directory (admin only)
|
||
# Usage: ./install-r-packages.sh package1 package2 package3
|
||
|
||
set -e
|
||
|
||
GREEN='\033[0;32m'
|
||
BLUE='\033[0;34m'
|
||
YELLOW='\033[1;33m'
|
||
RED='\033[0;31m'
|
||
NC='\033[0m'
|
||
|
||
echo -e "${BLUE}📦 R Package Installer (Admin)${NC}"
|
||
echo "================================"
|
||
echo ""
|
||
|
||
# Check if packages are provided
|
||
if [ $# -eq 0 ]; then
|
||
echo -e "${RED}❌ Error: No packages specified${NC}"
|
||
echo ""
|
||
echo "Usage:"
|
||
echo " ./install-r-packages.sh package1 package2 package3"
|
||
echo ""
|
||
echo "Example:"
|
||
echo " ./install-r-packages.sh reshape2 plotly knitr"
|
||
exit 1
|
||
fi
|
||
|
||
# Build package list
|
||
PACKAGES=$(IFS=,; echo "$*")
|
||
R_PACKAGES=$(echo "$PACKAGES" | sed "s/,/', '/g")
|
||
|
||
echo -e "${YELLOW}📋 Packages to install: ${R_PACKAGES}${NC}"
|
||
echo ""
|
||
|
||
# Create a temporary directory for installation
|
||
TEMP_DIR=$(mktemp -d)
|
||
echo -e "${BLUE}📁 Creating temporary directory: ${TEMP_DIR}${NC}"
|
||
|
||
# Install packages in temporary directory
|
||
echo -e "${BLUE}🔨 Installing R packages...${NC}"
|
||
docker run --rm \
|
||
--user root \
|
||
-v "${TEMP_DIR}:/temp_packages" \
|
||
jupyterhub-student:latest \
|
||
R -e "install.packages(c('${R_PACKAGES}'), lib='/temp_packages', repos='http://cran.rstudio.com/')" || {
|
||
echo -e "${RED}❌ Failed to install packages${NC}"
|
||
rm -rf "${TEMP_DIR}"
|
||
exit 1
|
||
}
|
||
|
||
# Copy to course volume
|
||
echo ""
|
||
echo -e "${BLUE}💾 Copying to course volume...${NC}"
|
||
docker run --rm \
|
||
-v jupyterhub-course:/target \
|
||
-v "${TEMP_DIR}:/source" \
|
||
alpine sh -c "mkdir -p /target/R_packages && cp -r /source/* /target/R_packages/"
|
||
|
||
# Clean up
|
||
rm -rf "${TEMP_DIR}"
|
||
|
||
# List installed packages
|
||
echo ""
|
||
echo -e "${GREEN}✅ Installation complete!${NC}"
|
||
echo ""
|
||
echo -e "${BLUE}📦 Installed packages in course/R_packages:${NC}"
|
||
docker run --rm \
|
||
-v jupyterhub-course:/course \
|
||
alpine ls -1 /course/R_packages/
|
||
|
||
echo ""
|
||
echo -e "${YELLOW}ℹ️ Students need to restart their R kernels to use new packages.${NC}" |