75 lines
2.0 KiB
Bash
75 lines
2.0 KiB
Bash
#!/bin/bash
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# Script to install R packages in the course directory (admin only)
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# Usage: ./install-r-packages.sh package1 package2 package3
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set -e
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GREEN='\033[0;32m'
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BLUE='\033[0;34m'
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YELLOW='\033[1;33m'
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RED='\033[0;31m'
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NC='\033[0m'
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echo -e "${BLUE}📦 R Package Installer (Admin)${NC}"
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echo "================================"
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echo ""
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# Check if packages are provided
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if [ $# -eq 0 ]; then
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echo -e "${RED}❌ Error: No packages specified${NC}"
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echo ""
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echo "Usage:"
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echo " ./install-r-packages.sh package1 package2 package3"
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echo ""
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echo "Example:"
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echo " ./install-r-packages.sh reshape2 plotly knitr"
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exit 1
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fi
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# Build package list
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PACKAGES=$(IFS=,; echo "$*")
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R_PACKAGES=$(echo "$PACKAGES" | sed "s/,/', '/g")
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echo -e "${YELLOW}📋 Packages to install: ${R_PACKAGES}${NC}"
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echo ""
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# Create a temporary directory for installation
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TEMP_DIR=$(mktemp -d)
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echo -e "${BLUE}📁 Creating temporary directory: ${TEMP_DIR}${NC}"
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# Install packages in temporary directory
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echo -e "${BLUE}🔨 Installing R packages...${NC}"
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docker run --rm \
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--user root \
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-v "${TEMP_DIR}:/temp_packages" \
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jupyterhub-student:latest \
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R -e "install.packages(c('${R_PACKAGES}'), lib='/temp_packages', repos='http://cran.rstudio.com/')" || {
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echo -e "${RED}❌ Failed to install packages${NC}"
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rm -rf "${TEMP_DIR}"
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exit 1
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}
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# Copy to course R packages directory
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echo ""
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echo -e "${BLUE}💾 Copying to course/R_packages...${NC}"
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docker run --rm \
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-v jupyterhub-course:/target \
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-v "${TEMP_DIR}:/source" \
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alpine sh -c "mkdir -p /target/R_packages && cp -r /source/* /target/R_packages/"
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# Clean up
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rm -rf "${TEMP_DIR}"
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# List installed packages
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echo ""
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echo -e "${GREEN}✅ Installation complete!${NC}"
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echo ""
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echo -e "${BLUE}📦 Installed packages in work/course/R_packages:${NC}"
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docker run --rm \
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-v jupyterhub-course:/course \
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alpine ls -1 /course/R_packages/
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echo ""
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echo -e "${YELLOW}ℹ️ Students need to restart their R kernels to use new packages.${NC}"
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