.venv/
src/target
data-stress
*.fasta
*.fasta.gz
*.zst
*.zst.meta
*.pb
./**/*.json
*.bin
*.log
*.csv
Betula_exilis--IGA-24-33
benchmark/genomes
benchmark/simulated_data
benchmark/specimen_index_presence
benchmark/specimen_index_count
benchmark/global_index_presence
benchmark/all_specific
benchmark/global_index_count
benchmark/stats
benchmark/reference_index
benchmark/reference_dist
benchmark/obikmer_dist
benchmark/specific_index_count
benchmark/specific_index_presence
TNT
phyg
*.tnt
*.tre
*.phy
*.treefile
*.bionj
*.iqtree
*.mldist
*.parstree
*.ckp.gz
*.model
