obikmer
obikmer
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Installation
Theory
Theory
Kmers and super-kmers
DNA encoding
Entropy filter
Minimizer selection
Partitioning architecture
Central-position SNP distance (discussion)
Implementation
Implementation
SuperKmer
Kmer
Chunk reader
Construction pipeline
obipipeline library
On-disk storage
MPHF selection
Unitig evidence encoding
Evidence elimination (discussion)
obilayeredmap crate
PersistentCompactIntVec
PersistentBitVec
Merge command
Merge parallelism & memory
Kmer filtering
Select command
obitaxonomy crate
Architecture
Architecture
Sequences
Kmer index
Sibling annex (discussion)
NUMA-aware worker pools
NUMA-aware partition runner
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