obikmer — User Guide
obikmer — User Guide
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Installation
Theory
Theory
Kmers and super-kmers
DNA encoding
Low-complexity kmer filter
Minimizer selection
Partitioning and indexing architecture
Usage
Usage
superkmer
index
merge
filter
select
query
dump
annotate
phylo
unitig
estimate
convert
utils
pack
Predicates and taxonomy paths
Formats
Formats
Index construction and on-disk layout
Architecture notes
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