obikmer — User Guide
obikmer — User Guide
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Installation
Theory
Theory
Kmers and super-kmers
DNA encoding
Low-complexity kmer filter
Minimizer selection
Partitioning and indexing architecture
Usage
Usage
superkmer
index
merge
filter
select
query
dump
annotate
phylo
name-tree
unitig
estimate
reindex
utils
pack
Predicates and taxonomy paths
Formats
Formats
Index construction and on-disk layout
Architecture notes
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