unitig

Dump the unitigs of an index as FASTA. A unitig is a maximal non-branching path through the de Bruijn graph implied by the index's kmers; the concatenation of every unitig reconstructs every stored kmer exactly once.

obikmer unitig INDEX [OPTIONS]

Arguments

Argument	Description
INDEX	Index directory

Options

unitig accepts the shared predicate options (--ingroup, --outgroup, --min-count, etc.) to restrict which kmers are included before the unitigs are enumerated.

Output is FASTA on stdout.