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First version including the rRNA detector

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Former-commit-id: 865e2626c7cd92ea596aedefe2b760b3eaaa9c77
Former-commit-id: 94a2e642328eb679660c6ac5a6cb6803c2083632
This commit is contained in:
Eric Coissac
2015-10-12 07:15:08 -03:00
parent bff0beaeee
commit 01c5880ace
530 changed files with 140563 additions and 19944 deletions
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data/rrna/RRNA_16S/00001_RRNA16S_NC_012097_111.align.fasta Normal file
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>RRNA16S_NC_012097_111 count=1; cluster_weight=1; cluster=RRNA16S_NC_012097_111; cluster_score=1.000000; cluster_center=True;
GGTCAAATGATTAAGGGCATACGGCGGATACCTAGGCACCTAGAGACGATGAAAGGCGCA
GTACCCGGCGATACGCCTTGGGGAGCCGGACACAGGCCATGATCCAAGGATTCCTGAATG
GGACAACCCAAGTACTTCTCATTGAATTCATAGATGAGAAAGAGATAACCTAGTGAATTG
AAACATCTTAGTAGCTAGAGGAAAAGAGAGCAAACGCGATTTCCTGAGTAGCGGCGAGCG
AAACGGAACGAGCCTAAACCAAAACTATGTTTTGGGGTTGTGGGACAGAAACTAATATTA
TAGTTTGACTTTGTTAGATGAAGCGATTGAATGTCGCGCCATAGATGGTGAAAGCCCAGT
AATCAAAAACAAAACTCTATAACTTCTGATCCCGAGTAGCATGGGGCACGTGAAATCCCG
TGTGAATCCGCGAGGACCACCTCGTAAGGCTAAATACTCCTAGGTGACCGATAGCGAATA
GTACCGCGAGGGAACGGTGAAAGAGTACCCTAATCAGGGAGTGAAATAGAACATGAAACC
GTATGCTTACAAGCAGTAGGAGGCATCATTTAAAATGCTAACTGCGTTCCTGTTGAAGAA
TGAGCCGGCGACTTATGGTCAGTGGCAAGGTTAAAACGAATAGTTGGAGCCAAAGCGAAA
GCGAGTCTGAAAGGGCGTCTGTCATTGGCTATAGACCCGAACCCGGGTGATCTAACCGCG
GTCAGGATGAAACTTGGGTAAGACTAAGTGGAGGTCCGAACCGACCGATGTTGAAAAATC
GGCGGATGAACTGTGGTTAGGGGTGAAATGCCAATCGAACTCGGAGCTAGCTGGTTCTCC
CCGAAATGCGTTGAGGCGCAGCGGTTGATGATTAGGCTGTCTAGGGGTAGAGCACTGTCT
CGGTGCGGGCTGCGAGAGCGGTACCAAATCGTAGCAAACTCCGAATACTAGAACAGAGCC
ATCAGCCAGTGAGACTGTGGGGGATAAGCTCCATTGTCGAGAGGGAAACAGCCCAGACCA
TCGGCTAAGGCCCCTAAATGATTACTAAGTGATAAAGGAGGTGAGAGTGCCCAGACAACC
AGGAGGTTTGCCTAGAAGCAGCCACCCTTGAAAGAGTGCGTAATAGCTCACTGGTCAAGC
GCTCTTGCGCCGAAAATGAACGGGACTAAGTAATCTGCCGAAGCTGTGGGATAACAATTT
GTTATCGGTAGGGGAGCGTTCCGAAAAGGGCGAAGTTTAGGCGTGAGCCTTGATGGACTT
TTCGGAAGTGAGAATGTCGGCTTGAGTAACGAAAACAGGGGTGATGAATCCCCTGCCCCG
AAAGCCCAAGGGTTCCTCCACTAGGCTCGTCCAGGGAGGGTCAGTCAGGACCTAAGACGA
GGCCAAACGGCGCAGTCGATGGAAAACAGGCGAACATTCCTGTACTACGTTCCATAATCT
GAAACAATTTTTGTTGAAGCACGTACCGGAGGACGGAGAGGGTTATGTTAAACGGTGGGC
ACGTTCTCTAACTCGCAGTGATTACAGAGAGGAAAAGAAAACTCTTTGAGCGAAGAGATT
AGGGCTTTACTTTTTACTTGTTATTTCAAAATAACATTGTGCCACCAATGATAAAAAGTA
AAGATTAACAGATACCGAGATCCCGAGAAAAGTCCGTACTATGTGAAATGAAGAACGTAC
CTGTACCCCAAACCGACACAGGTGGGCAAGTAGAGAATACTAAGGGGCGCGAGATAACTC
TCTCTAAGGAACTCGGCAAAATGGCCCCGTAACTTCGGGAGAAGGGGTGCCGGATTATAT
CCGGCCGCAGCGACCAGGCCCAAGCGACTGTTTACCAAAAACACAGGTCTCCGCTAAATC
GAAAGATGACGTATGGGGGCTGACGCCTGCCCAGTGCCGGAAGGTTAAGGAAGCTGGTTA
GGATTACCGAAGCTAGCGACTGAAGCCCCGGTGAACGGCGGCCGTAACTATAACGGTCCT
AAGGTAGCGAAATTCCTTGTCGGGTAAGTTCCGACCCGCACGAAAGGCGTAACGATTTGG
GCACTGTCTCGGAGAGAGGCTCGGTGAAATAGAATTGTCTGTGAAGATGCGGACTACCTG
CACTTGGACAGAAAGACCCTATGAAGCTTTACTGTAGCTTGAGATTGGGCTCGGGCTTTT
CTTGCGCAGCTTAGGTGGGAGGCTTAGATCCTATTCTTTTGGGAATAGAGGAGCCGTCAG
TGAGATACCACTCTAGGAAGGCTAGAGTCCTAAGGGTGCTCCCTTTGCGGGACACCTAAC
AGTCTCAGGTAGGCAGTTTGACTGGGGCGGTCGCCTCCTAAAAGGTAACGGAGGCGTGCA
AAGGTTCCCTCAGGCTGGACGGAAATCAGTCGTAGAGTATAAAGGCAGAAGGGAGCTTGA
CTGCGAGACTGACACGTCAAGCAGGGGCGAAAGCCGGCCTTAGTGATCCGACGGTTCCGT
GTGGAAGGGCCGTCGCTCAACGGATAAAAGTTACTCTAGGGATAACAGGCTGATCTCCCC
CAAGAGTTCACATCGACGGGGAGGTTTGGCACCTCGATGTCGGCTCATCGCAGCCTGGGG
CGGTAGTGCGTCCCAAGGGTTGGGCTGTTCGCCCATGAAAGCGGTACGTGAGCTGGGTTC
AGAACGTCGTGAGACAGTTCGGTCCATATCCGGTGTGGGCGCTAGAGCATTGAGAGGATC
CCCCCCTAGTACGAGAGGACCGGGGGGTATGCACCGCTGGTGTACCAGTTCTTTCCCTAC
GATCTGTAGGTAAGGATACGCTGGGTAGCTATGTGTGGAGTGGATAACTGCTGAAGGCAT
CTAAGTAGGAAGCCCACCTCAAGATGAGTGCTCTTTGAGGCCACGGCAAGACTAGCCGGT
AATAAGGATTTTCAGTTATGAAATCTTTCCAGGCTCTAAGTGGAAGCTTTGTAAAAAGTG
CAGCTGAGGAGTTCTGATAGGCCAAAAGTTTGACCAT