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First version including the rRNA detector

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Former-commit-id: 865e2626c7cd92ea596aedefe2b760b3eaaa9c77
Former-commit-id: 94a2e642328eb679660c6ac5a6cb6803c2083632
This commit is contained in:
Eric Coissac
2015-10-12 07:15:08 -03:00
parent bff0beaeee
commit 01c5880ace
530 changed files with 140563 additions and 19944 deletions
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data/rrna/RRNA_16S/00002_RRNA16S_NC_025537_340.align.fasta Normal file
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>RRNA16S_NC_025537_340 count=1; cluster_weight=2; cluster=RRNA16S_NC_025537_340; cluster_score=1.000000; cluster_center=True;
TTTCATGGAGAGTTTGATCCTGGCTCAGGATGAACGCTGGCGGCATGCTTAACACATGCA
AGTCGAACGGGATTGTTTTACAA--TCTAGTGGCGGACGGGTGAGGAACACGTAAGAACT
TACCTTTAGGAGGGGGACAACAGCTGGAAACGGTTGCTAATACCCCATATGCTGAGGAGC
GAAAGGGTTT--TCCCGCCTAAAGACAGGCTTGCGTCTGATTAGCTAGTTGGTGAGGTGA
TGGCTTACCAAGGCGACGATCAGTAGCTGGTCTGAGAGGATGATCAGCCACACTGGGACT
GAGACACGGCCCAGACTCCTACGGGAGGCAGCAGTGAGGAATTTTCCGCAATGGGCGAAA
GCCTGACGGAGCAATGCCGCGTGGAGGACGACGGCTCGTGGGTTGTAAACTCCTTTTCTC
AGAGAAGAAAAAATGACGGTATCTGAGGAAGAAGCATCGGCTAACTCCGTGCCAGCAGCC
GCGGTAAGACGGAGGATGCAAGCGTTATCCGGAATGATTGGGCGTAAAGCGTCTGTAGGT
GGTTGATGAAGTCTACTGTTAAATATTAGGGCTTAACCCTGGGAAGGCAGTAGAAACTCA
TCGGCTAGAGTACGGTAGGGGCAGAGGGAATTCCCGGTGTAGCGGTGAAATGCGGAGATA
TCGGGAAGAACACCAATGGCGAAAGCACTCTGCTGGGCCGACACTGACACTGAGAGACGA
AAGCTAGGGGAGCAAACGGGATTAGATACCCCGGTAGTCCTAGCTGTAAACGATGGATAC
TAAGTGCTGTGCGGTGAGACTTTTTACAGTCAAACAAA--------------AAAACGTC
CAGTGCTGTAGCTAACGCGTGAAGTATCCCGCCTGGGGAGTATGCTCGCAAGAGTGAAAC
TCAAAGGAATTGACGGGGGCCCGCACAAGCGGTGGAGCATGTGGTTTAATTCGATGCAAC
GCGAAGAACCTTACCAGGGCTTGACATGCCATATATCCCTTTGAAAGAAGGAGTTAAAAG
TGGACACAGGTGGTGCATGGCTGTCGTCAGCTCGTGTCGTGAGATGTTGGGTTAAGTCCC
GCAACGAGCGCAACCCTTGTTTTTTGTTGCCAAGGTTTTTATCTT-------GGGTATAT
TCACAAAAAAGACTGCCGGTGATAAGCCGGAGGAAGGTGGGGATGACGTCAAGTCAGCAT
GCCCCTTACGCCCTGGGCGACACACGTGCTACAATGGCCGGGACAAAGAGAAGCAATCCT
GCGAAGGCTAGCCAACCTCAAAAACCCGGTCTTAGTTCGGATTGCAGGCTGCAACTCGCC
TGCATGAAGCCGGAATCGCTAGTAATCGCCGGTCAGCCATACGGCGGTGAATACGTTCCC
GGGCCTTGTACACACCGCCCGTCACACCATGGGAGCTGGCTACGCCCAAAGTCGTTACTT
TAACCCTC-TGGGAGGAGGACGCCTAAGGCGGGGCTAGTGACTGGGGTGAAGTCGTAACA
AGGTAGCCGTACTGGAAGGTGCGGCTGGATCACCTCCTAA
>RRNA16S_NC_025543_346 count=1; cluster_weight=2; cluster=RRNA16S_NC_025537_340; cluster_score=0.938511; cluster_center=False;
TTTTATGGAGAGTTTGATCCTGGCTCAGGATGAACGCTGGCGGCATGCTTAACACATGCA
AGTCGAACGGGGCTTCTTCGGAATGTCTAGTGGCGGACGGGTGAGGAACACGTAAGAACT
AACCTTTAGGAGGGGGACAACAACTGGAAACGGTTGCTAATACCCCATATGCTGAGGAGT
AAAAGGGAGTAATCCCGCCTAAAGACAGGCTTGCGTCTGATTAGCTTGTTGGTGGGGTGA
TGGCTTACCAAGGCGACGATCAGTAGCTGGTCTGAGAGGATGATCAGCCACACTGGGACT
GAGACACGGCCCAGACTCCTACGGGAGGCAGCAGTGAGGAATTTTCCGCAATGGGCGAAA
GCCTGACGGAGCAATGCCGCGTGGAGGACGAAGGCTCGTGGGTTGTAAACTCCTTTTCTT
AGAGAAGAAATTCTGACGGTATCTGAGGAACAAGCATCGGCTAACTCCGTGCCAGCAGCC
GCGGTAATACGGAGGATGCAAGCGTTATCCGGAATGATTGGGCGTAAAGCGTCTGTAGGT
GGTTGGTGAAGTCTCCTGTTAAAGATTAGGGCTTAACCCTAGGAAGGCAGTAGAAACTCA
CTAGCTAGAGTACGGTAGGGGCAGGGGGAATTCCCGGTGTAGCGGTGAAATGCGGAGATA
TCGGGAAGAACACCAATGGCGAAAGCACTCTGCTGGGCCGACACTGACACTGAGAGACGA
AAGCTAGGGTAGCAAACGGGATTAGATACCCCGGTAGTCCTAGCTGTAAACGATGGATAC
TAAGTGCTGGGCGGT--TTTTCTCTACTCGCAAGAGAATGGGAATTACACACAAAACGGT
CAGTGCTGTAGCTAACGCGTGAAGTATCCCGCCTGGGGAGTATGCTCGCAAGAGTGAAAC
TCAAAGGAATTGACGGGGGCCCGCACAAGCGGTGGAGCATGTGGTTTAATTCGATGCAAC
GCGAAGAACCTTACCAGGGCTTGACATGCCATATATCCCTTTGAAAGAAGGAGTCAAAAG
TGGACACAGGTGGTGCATGGCTGTCGTCAGCTCGTGTCGTGAGATGTTGGGTTAAGTCCC
GCAACGAGCGCAACCCTCGTTTTTTGTTGC------TCCTCTCTTAGAGAGGAGGTTTTT
TCACAAAAAAGACTGCCGGTGACAAGCCGGAGGAAGGTGGGGATGACGTCAAGTCAGCAT
GCCCCTTACGTCCTGGGCTACACACGTGCTACAATGGCCGGGACAATGAGATGCAATCCT
GCGAAGGTTAGCCAACCTCAAAAACCCGGTCTTAGTTCGGATTGCAGGCTGCAACTCGCC
TGCATGAAGCCGGAATCGCTAGTAATCGCCGGTCAGCCATACGGCGGTGAATACGTTCCC
GGGCCTTGTACACACCGCCCGTCACACCACGGGAGCTGGCTACGCCCAAAGTCGTTACTT
TAACCTTCACGGGAAAAGGACGCCTAAGGTGGGGCTAGTGACTGGGGTGAAGTCGTAACA
AGGTAGCCGTACTGGAAGGTGCGGCTGGATCACCTCCTTT