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First version including the rRNA detector

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Former-commit-id: 865e2626c7cd92ea596aedefe2b760b3eaaa9c77
Former-commit-id: 94a2e642328eb679660c6ac5a6cb6803c2083632
This commit is contained in:
Eric Coissac
2015-10-12 07:15:08 -03:00
parent bff0beaeee
commit 01c5880ace
530 changed files with 140563 additions and 19944 deletions
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6
data/rrna/RRNA_16S/00003_RRNA16S_NC_005353_380.fasta Normal file
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>RRNA16S_NC_005353_380 count=1; cluster_weight=3; cluster=RRNA16S_NC_005353_380; cluster_score=1.000000; cluster_center=True;
atccatggagagtttgatcctggctcaggacgaacgctggcggcatgcttaacacatgcaagtcgaacgagcaaagcaatttgtgtagtggcgaacgggtgcgtaacgcgtaagaacctacctatcggagggggataacattgggaaactgttgctaataccccatacagctgaggagtgaaaggtgaaaaaccgccgatagaggggcttgcgtctgattagctagttggtgggggtaacggcctcccaaggccacgagcagtagctggtctgagaggatgatcagccacactgggactgagacacggcccagactcctacgggaggcagcagtgaggaatttttcgcaatgggcgcaagcgacggagcaatgccgcgtgcaggaagaaggcctgtgggtcgtaaactgcttttctcagagaagaagttctgacggtatctgaggaataagcaccggctaactctgtgccagcagccgcggtaatacagagggtgcaagcgttgtccgcaatgattgggcgtaaagcgtctgtaggtggctcgtaaagtctaatgtcaaataccagggctcaaccttggaccggcattggagtactcacgagcttgagtacggtaggggcagagggaattccatgtggagcggtgaaatgcgtagagatatggaggaacaccagtggcgaaggcgctctgctgggccgaaactgacactgagagacgaaagctgggggagcgaataggattagataccctagtagtcccagccgtaaactatggagactaagtgctgccgcaagcagtgctgtagctaacgcgttaagtctcccgcctggggagtatgctcgcaagagtgaaactcaaaggaattgacgggaccgcacaagcggtggattatgtggattaattcgatacaacgcgaagaaccttaccagggtttgacatgtcaagaacctctcagaaatgggagggtgccctaacggacttgaacacaggtggtgcatggctgtcgtcagctcgtgctgtgaagtgtatagttaagtctcataacgagcgcaaccctcgtctttagttgccatttggttctctaaagagactgccagtgtaagctggaggaaggtgaggatgacgtcaagtcagcatgccccttacatcctgggcttcacacgtaatacaatggttgggacaatcagaagcgactcgtgagagctagcggctctgttaaacccaacctcagttcggattgtaggctgcaactcgcctacatgaagccggaatcgctagtaatcgccagtcagctatatggcggtgaatacgttcccgggtcttgtacacaccgcccgtcacaccatggaagctggttctgctccaagtcgttaccctaaccttcgggaggggggcgcctaaagcagggctagtgactagggtgaagtcgtaacaaggtagggctactggaaggtggccctggctcacctccttc
>RRNA16S_NC_021109_381 count=1; cluster_weight=3; cluster=RRNA16S_NC_005353_380; cluster_score=0.938748; cluster_center=False;
atccatggagagtttgatcctggctcaggacgaacgctggcggcatgcttaacacatgcaagtcgaacgagcattaaatttttaatgtgtagtggcgaacgggtgcgtaacgcgtaagaacctacctatcggagggggataacattgggaaactgttgctaataccccataaaagctgaggagtgaaaggtgtaaaaccgccgatagaggggcttgcgtctgattagctagttggagggggtaatggcctcccaaggccacgatcagtagctggtctgagaggatgatcagccacactgggactgagacacggcccagactcctacgggaggcagcagtgaggaatttttcgcaatgggcgaaagcctgacgaagcaatgccgcgtgcaggaagaaggcctgtgggtcgtaaactgcttttcttagagaagaagttctgacggtatctgaggaataagcaccggctaaccctgtgccagcagccgcggtaatacagggggtgcaagcgttgtccggaatgattgggcgtaaagcgtctgtaggtggctcgtaaagtctaatgtcaaataccagggctcaaccttggatcggcattagagcactcacgagcttgagtacggtagaggcagagggaactccaagtggagcggtgaaatgcgtagagatttggaagaacaccagaggcgaaggcgctctgctgggccgaaactgacactgagagacgaaagctgggggagcgaataggattagataccctagtagtcccagccgtaaactatggagactaagtgctgcctcaagcagtgctgtagctaacgcgttaagtctcccgcctggggagtatgctcgcaagagtgaaactcaaaggaattgacggggacccgcacaagaggtggattatgtggattaattcgatgcaacgcgaagaaccttaccagggtttgacatgtcaagaacttcccagaaatgggagggtgccctaacgggagcttgaacacaggtggtgcatggctgtcgtcagctcgtgccgtgaggtgtatagttaagtctcataacgagcgcaaccctcgtctttagttgccatttggttctctaaagagactgccagtgtaagctggaggaaggtgaggatgacgtcaagtcagcatgccccttacaccctgggcttcacacgtaatacaatggttgggacaatcagaagcgatctcgtgagagctagcggatctgttaaacccaacctcagttcggattgtaggctgcaactcgcctccatgaagccggaatctctagtaatcgccagtcagctatatggcggtgaatacgttcccgggtcttgtacacaccgcccgtcacaggccgaaaattaactcaactttaagcagtgagctgaacctgctttgcaggacgggagctaccacagtggggttagtaattgatctgaagtcgtaacaaggtagggctactggaaggtggccctggatcacctccttc
>RRNA16S_NC_020438_382 count=1; cluster_weight=3; cluster=RRNA16S_NC_005353_380; cluster_score=0.964453; cluster_center=False;
atccatggagagtttgatcctggctcaggacgaacgctggcggcatgcttaacacatgcaagtcgaacgagcatttcattctgaaatgtgtagtggcgaacgggtgcgtaacgcgtaagaacctacctatcggagggggataacattgggaaactgttgctaataccccataaaagctgaggagtgaaaggttaaaaccgccgatagaggggcttgcgtctgattagctagttggtgggggtaatggcctcccaaggccacgatcagtagctggtctgagaggatgatcagccacactgggactgagacacggcccagactcctacgggaggcagcagtgaggaatttttcgcaatgggcgaaagcctgacgaagcaatgccgcgtgcaggtagaaggcctgtgggttgtaaactgcttttctcagagaagaagttctgacggtatctgaggaataagcaccggctaactctgtgccagcagccgcggtaatacagagggtgcaagcgttgtccggaatgattgggcgtaaagcgtctgtaggtggctcgtaaagtctaatgtcaaataccagggctcaaccttggatcggcattggagcactcacgagcttgagtacggtagaggcagagggaattccaagtggagcggtgaaatgcgtagagatttggaggaacaccagtggcgaaggcgctctgctgggccgaaactgacactgagagacgaaagctgggggagcgaataggattagataccctagtagtcccagccgtaaactatggagactaagtgctgcttttttgcagtgctgtagctaacgcgttaagtctcccgcctggggagtatgctcgcaagagtgaaactcaaaggaattgacggggacccgcacaagcggtggattatgtggattaattcgatgcaacgcgaagaaccttaccagggtttgacatgtcaagaactcttcagaaatggggaggtgccctaacgggaacttgaacacaggtggtgcatggctgtcgtcagctcgtgctgtgaagtgtatagttaagtctcataacgagcgcaaccctcgtctttagttgccatttggttctctaaagagactgccagtgtaagctggaggaaggtgaggatgacgtcaagtcagcatgccccttacaccctgggcttcacacgtaatacaatggttgggacaatcagaagcgatctcgtgagagctagcggatctgtgaaacccaacctcagttcggattgtaggctgcaactcgcctacatgaagccggaatcgctagtaatcgccagtcagctatatggcggtgaatacgttcccgggtcttgtacacaccgcccgtcacaccccggaagctggttctgctccaagtcgttaccctaacctttttggaggggggcgcctaaagcagggctagtgaccagggtgaagtcgtaacaaggtagggctactggaaggtggccctggatcacctccttc