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First version including the rRNA detector

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Former-commit-id: 865e2626c7cd92ea596aedefe2b760b3eaaa9c77
Former-commit-id: 94a2e642328eb679660c6ac5a6cb6803c2083632
This commit is contained in:
Eric Coissac
2015-10-12 07:15:08 -03:00
parent bff0beaeee
commit 01c5880ace
530 changed files with 140563 additions and 19944 deletions
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data/rrna/RRNA_16S/00003_RRNA16S_NC_024732_157.align.fasta Normal file
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>RRNA16S_NC_024732_157 count=1; cluster_weight=3; cluster=RRNA16S_NC_024732_157; cluster_score=1.000000; cluster_center=True;
TCTCATGGAGAGTTCGATCCTGGCTCAGGATATTAGCGAAGTGGCCCCTCGAATCGACTT
GAGCCTTCCAAAATATCAGAATCCATCTGATGAGCAACCTGGTGAAAAGAAATGGATCCG
TGCTAACAGTTCCCTCTGCTGCATGTGAGTTTTTCTATTTTGATTTCCTCCCCCGCCGTG
ATTGAATGAGAATGGATAAGAGGCTCGGTGTATTGACGTGAGGGGGCAGGGATGGCTATA
TTTCTGGGAGCGAACTCCGGGCGACTAGGAAGGGCATGGATACAAGTTAGTCCTTGGAAT
GAAAGACAATTCCGAATCCGCTTTGTCTACGAACAAGGAAGCTATAAGTAATGCAACTAT
GAATCTCATGGAGAGTTCGATCCTGGCTCAGGATGAACGCTGGCGGCATGCTTAACACAT
GCAAGTCGGACGGGAAGTGGTGTTTCCAGTGGCGGACGGGTGAGGAACGCGTAAGAACCT
GCCCTTGGGAGGGGAACAACAGCTGTAACGGCTGCTAATACCCCGTAGGCTGAGGAGCAA
AAGGAGGAATCCGCCCGAGGAGGGGCTTGCGCCTGATTACTGCCAGTTGGTGAGGTAATG
GCTTACCAAAGTGATGATCAGTAGCTGGTCCGAGAGGATGATCAGCCACACTGGGACTGA
GACACGGCCCAGACTCTTACGGGGGGCAGCAGTGAGGAATTCTCCGCAATGGGCGAAAGC
CTGACGGGGCAATGCCGCGTGGAGGCAGAAGGCCCATGGTCGTAAACTTCTTTTCCCGGA
GAAGAAGCAATGACGGTATCTGGGGAATAAGCATCGGCTAACTCTGTGCCAGCAGCCGCG
GTAAGACAGAGGATGCAAGCGTTATCCGGAATGATTGGGCGTAAAGCGTCTGTAGGTGGC
TTTTTAAGTCCGCCGTCAAATCCCAGGGCTCAACCCTGGACAGGCGGTGGAAACTACCAA
GCTGGAGTACGGTAGGGGCAGAGGGAATTTCCGGTGGAGCGGTGAAATGCGTTGAGATCG
GAAAGAACACCAAGGGCGAAAGCACTCTGCTGGGCCGCCACTGACACTGAGAGACGAAAG
CTTGTGATATCGAAAGGGATTAGATACCCCAGTAGTGCAGCCGTAAACGATGGATACTAG
GCGCTGTGCGATCGACCCGTTCAGTGCTGTAGCTAACGCGTTAAGTATCCCGCCTGGGGA
GTACGTTCGCAAGAATGAAACTCAAAGGAATTGACGGGGGCCCGCACAAGCGGTGGAGCA
TGTGGTTTAATTCGATGCAAAGCGAAGAACCTTACCAGGGCTTGACATGCCGCGAATCTT
CTTGAAAGAGAGGGGTGCCTTCGGGAACGCGGACACAGGTGGTGCATGGCTGTCGTCAGC
TCGTGCCGTAAGGTGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTCGTGTTTAGTTGCC
TGATTTGGAACCCTGAACAGACTGCCGGTGATAAGCCGGAGGAAGGTGAGGATGACGTCA
AGTCATCATGCCCCTTATGCCCTGGGCGACACACGTGCTACAATGGACGGGACAAAGGGC
CGCGATCCCGCGAGGGGGAG-CTAACTCTAAAAACCCGTCCTCAGTTCGGATTGCAGGCT
GCAACTCGCCTGCATGAAGCCGGAATCGCTAGTAATCGCCAGTCAGCCATACGGCGGTGA
ATTCGTTCTCGGGCCTTGTACACACCGCCCGTCACACTAGGGAAGCTGGCCGTGCTAGAA
ATCGTTACCTTAACCGCAAGGAGGGGGATGCCGAAGGCGGGGCTAGTGACTGGAGTGAAG
TCGTAACAAGGTAGCCGTACTGGAAGGTGTGGCTGGATTACCTCC---
>RRNA16S_NC_026203_158 count=1; cluster_weight=3; cluster=RRNA16S_NC_024732_157; cluster_score=0.987534; cluster_center=False;
TCTCATGGAGAGTTCGATCCTGGCTCAGGATATTAGCGAAGTGGCCTCTCGAATCGACTT
GAGCCTTCAAAAATATCAGAATACATCTGATGAGCAACCTGGTGAAAAGAAATTGATCCG
TGCTAACTGTTCCCTCTGCTGCATGTGAGTTTTTCTATTTTGATTTCCTCCCCCGCCGTG
ATTGAATGAGAATGGATAAGAGGCTCGGTGTATTGACGTGAGGGGGCAGGGATGGCTATA
TTTCTGGGAGCGAACTCCGGGCGAATATGACGGGCATGGAGACAAGTTAGGCCTTGGAAT
GAAAGACAATTCCGAATCCGCTTTGTCTACGAACAAGGAAGCTATAAGTAATGCAACTAT
GAATCTCATGGAGAGTTCGATCCTGGCTCAGGATGAACGCTGGCGGCATGCTTAACACAT
GCAAGTCGGACGGGAAGTGGTGTTTCCAGTGGCGGACGGGTGAGGAACGCGTAAGAACCT
GCCCTTGGGATGGGAATAACAGCTGTAACGGCTGCTAATACCCCGTAGGCTGAGGAGCAA
AAGGAGGAATCCGCCCGAGGAGGGGCTTGCGCCTGATTACTGCCAGTTGGTGAGGTAATA
GCTTACCAAAGTGATGATCAGTAGCTGGTCCGAGAGGATGATCAGCCACACTGGGACTGA
GACACGGCCCAGACTCTTACGGGGGGCAGCAGTGAGGAATTCTCCGCAATGGGCGAAAGC
CTGACGGGGCAATGCCGCGTGGAGGCAGAAGGCCCATGGTCGTAAACTTCTTTTCCCGGA
GAAGAAGCAATGACGGTATCTGGGGAATAAGCATCGGCTAACTCTGTGCCAGCAGCCGCG
GTAAGACAGAGGATGCAAGCGTTATCCGGAATGATTGGGCGTAAAGCGTCTGTAGGTGGC
TTTTTAAGTCCGCCGTCAAATCCCAGGGCTCAACCCTGGACAGGCGGTGGAAACTACCAA
GCTGGAGTACGGTAGGGGCAGAGGGAATTTCCGGTGGAGCGGTGAAATGCGTAGAGATCG
GAAAGAACACCAAGGGCGAAAGCACTCTGCTGGGCCGCCACTGACACTAAGAGACGAAAG
CTTGTGGTATCGAATGGGATTAGATACCCCAGTAGTGCAGCCGTAAACGATGGATACTAG
GCGCTGGGCGATCGACCCGTTCAGTGCTGTAGCTAACGCGTTAAGTATCCCGCCTGGGGA
GTACGTTCGCAAGAATGAAACTCAAAGGAATTGACGGGGGCCCGCACAAGCGGTGGAGCA
TGTGGTTTAATTCGATGCAAAGCGAAGAACCTTACCAGGGCTTGACATGCCGCGAATCTT
CTTGAAAGAGAGGGGTGCCTTCGGGAACGCGGACACAGGTGGTGCATGGCTGTCGTCAGC
TCGTGCCGTAAGGTGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTCGTGTTTAGTTGCC
TGATTTGGAACCCTGAACAGACTGCCGGTGATAAGCCGGAGGAAGGTGAGGATGACGTCA
AGTCATCATGCCCCTTATGCCCTGGGCGACACACGTGCTACAATGGACGGGACAAAGGGT
CGCGATCCCGCGAGGGGGAGCCTACCTCTAAAAACCCGTCCTCAGTTCGGATTGCAGGCT
GCAACTCGCCTGCATGAAGTCGGAATCGCTAGTAATCGCCGGTCAGCCATACGGCGGTGA
ATTCGTTCTCGGGCCTTGTACACACCGCCCGTCACACTAGGGAAGCTGGCCGTGCTAGAA
ATCGTTACCTTAACCGCAAGGAGGGGGATGCCGAAGGCGGGGCTAGTGACTGGAGTGAAG
TCGTAACAAGGTAGCCGTACTGGAAGGTGTGGCTGGATTACCTCC---
>RRNA16S_NC_010442_159 count=1; cluster_weight=3; cluster=RRNA16S_NC_024732_157; cluster_score=0.988630; cluster_center=False;
TCTCATGGAGAGTTCGATCCTGGCTCAGGATATTAGCGAAGTGGCCTCTCGAATCGACTT
GAGCCTTCAAAAATATCCGAATACATCTGATGAGCAACCTGGTGAAAAGAAATGGATCCG
TGCTAACTGTTCCCTCTGCTGCATGTGAGTTTTTCTATTCTGATTTCCTCCCCCGCCGTG
ATTGAATGAGAATGGATAAGAGGCTCGGTGTATTGACGTGAGGGGGCAGGGATGGCTATA
TTTCTGGGAGCGAACTCCGGGCGAATATGAAGGGCATGGAGACAAGTTAGGCCTTGGAAT
GAAAGACAATTCCGAATCCGCTTTGTCTACGAACAAGGAAGCTATAAGTAATGCAACTAT
GAATCTCATGGAGAGTTCGATCCTGGCTCAGGATGAACGCTGGCGGCATGCTTAACACAT
GCAAGTCGGACGGGAAGTGGTGTTTCCAGTGGCGGACGGGTGAGGAACGCGTAAGAACCT
GCCCTTGGGAGGGGAACAACAGCTGTAACGGCTGCTAATACCCCGTAGGCTGAGGAGCAA
AAGGAGGAATCCGCCCGAGGAGGGGCTTGCGCCTGATTACTGCCAGTTGGTGAGGTAATA
GCTTACCAAAGTGATGATCAGTAGCTGGTCCGAGAGGATGATCAGCCACACTGGGACTGA
GACACGGCCCAGACTCTTACGGGGGGCAGCAGTGAGGAATTCTCCGCAATGGGCGAAAGC
CTGACGGGGCAATGCCGCGTGGAGGCAGAAGGCCCATGGTCGTAAACTTCTTTTCCCGGA
GAAGAAGCAATGACGGTATCTGGGGAATAAGCATCGGCTAACTCTGTGCCAGCAGCCGCG
GTAATACAGAGGATGCAAGCGTTATCCGGAATGATTGGGCGTAAAGCGTCTGTAGGTGGC
TTTTTAAGTCCGCCGTCAAATCCCAGGGCTCAACCCTGGACAGGCGGTGGAAACTACCAA
GCTGGAGTACGGTAGGGGCAGAGGGAATTTCCGGTGGAGCGGTGAAATGCGTAGAGATCG
GAAAGAACACCAAGGGCGAAAGCACTCTGCTGGGCCGCCACTGACACTGAGAGACGAAAG
CTTGTGGTATCGAATGGGATTAGATACCCCAGTAGTGCAGCCGTAAACGATGGATACTAG
GCGCTGTGCGATCGACCCGTTCAGTGCTGTAGCTAACGCGTTAAGTATCCCGCCTGGGGA
GTACGTTCGCAAGAATGAAACTCAAAGGAATTGACGGGGGCCCGCACAAGCGGTGGAGCA
TGTGGTTTAATTCGATGCAAAGCGAAGAACCTTACCAGGGCTTGACATGCCGCGAATCTT
CTTGAAAGAGAGGGGTGCCTTCGGGAACGCGGACACAGGTGGTGCATGGCTGTCGTCAGC
TCGTGCCGTGAGGTGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTCGTGTTTAGTTGCC
TGATTTGGAACCCTGAACAGACTGCCGGTGATAAGCCGGAGGAAGGTGAGGATGACGTCA
AGTCATCATGCCCCTTATGCCCTGGGCGACACACGTGCTACAATGGACGGGACAAAGGGC
CGCGATCCCGCGAGGGGGAG-CTAACTCTAAAAACCCGTCCTCAGTTCGGATTGCAGGCT
GCAACTCGCCTGCATGAAGTCGGAATCGCTAGTAATCGCCGGTCAGCCATACGGCGGTGA
ATTCGTTCTCGGGCCTTGTACACACCGCCCGTCACACTAGGGAAGCTGGCCGTGCTAGAA
ATCGTTACCTTAACCGCAAGGAGGGGGATGCCGAAGGCGGGGCTAGTGACTGGAGTGAAG
TCGTAACAAGGTAGCCGTACTGGAAGGTGTGGCTGGATTACCTCCTTT