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First version including the rRNA detector

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Former-commit-id: 865e2626c7cd92ea596aedefe2b760b3eaaa9c77
Former-commit-id: 94a2e642328eb679660c6ac5a6cb6803c2083632
This commit is contained in:
Eric Coissac
2015-10-12 07:15:08 -03:00
parent bff0beaeee
commit 01c5880ace
530 changed files with 140563 additions and 19944 deletions
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data/rrna/RRNA_16S/00037_RRNA16S_NC_026302_19.align.fasta Normal file
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>RRNA16S_NC_026296_20 count=5; cluster_weight=37; cluster=RRNA16S_NC_026302_19; cluster_score=0.917355; cluster_center=False;
AATTCTGGTGTCTCAGGCGTAGGGGAACCACACCAATCCATCCCGAACTTGGTGGTTAAA
CTTTACTGCGGTGACGATACTGCAGGGGAAGCCCTGTGGAAAAATAGCTCGATGCCAGAA
T
>RRNA16S_NC_024024_36 count=3; cluster_weight=37; cluster=RRNA16S_NC_026302_19; cluster_score=0.909091; cluster_center=False;
AATTCTGGTGTCTGAGGCGTAGGGGAACCACACCAATCCATCCCGAACTTGGTGGTTAAA
CTTTACTGCGGTGACGATACTGCAGGGGAAGCCCTGTGGAAAAATAGCTCGATGCCAGAA
T
>RRNA16S_NC_024945_373 count=1; cluster_weight=37; cluster=RRNA16S_NC_026302_19; cluster_score=0.950413; cluster_center=False;
AATTCTGGTGTCTCAGGCGTAGGGGAACCACACCAATCCATCCCGAACTTGGTGGTTAAA
CTCTACTGCGGTGACGATACTGTAGGGGAAGCCCTGCGGAAAAATAGCTCGATGCCAGGA
T
>RRNA16S_NC_020321_374 count=1; cluster_weight=37; cluster=RRNA16S_NC_026302_19; cluster_score=0.942149; cluster_center=False;
AATTCTGGTGTCTCAGGCGTAGGGGAACCACACCAATCCATCCCGAATTTGGTGGTTAAA
CTCTACTGCGGTGACGATACTGTAGGGGAAGCCCTGCGGAAAAATAGCTCGATGCCAGGA
T
>RRNA16S_NC_011156_372 count=1; cluster_weight=37; cluster=RRNA16S_NC_026302_19; cluster_score=0.991736; cluster_center=False;
AATTCTGGTGTCCCAGGCATAGAGGAACCACACCAACCCATCCCGAACTTGGTGGTTAAA
CTCTACTGCGGTGACGATACTGTAGGGGGAGCCCTGCGGGAAAATAGCTCGGTGCCAGGA
T
>RRNA16S_NC_026302_19 count=5; cluster_weight=37; cluster=RRNA16S_NC_026302_19; cluster_score=1.000000; cluster_center=True;
AATTCTGGTGTCCCAGGCATAGAGGAACCACACCAACCCATCCCGAACTTGGTGGTTAAA
CTCTACTGCGGTGACGATACTGTAGGGGAAGCCCTGCGGGAAAATAGCTCGGTGCCAGGA
T
>RRNA16S_NC_016064_103 count=1; cluster_weight=37; cluster=RRNA16S_NC_026302_19; cluster_score=0.975207; cluster_center=False;
GATTCTGGTGTCCAAGGCGTAGAGGAACCACACCAACCCATCCCGAACTTGGTGGTTAAA
CTCTACTGCGGTGACGATACTGTAGGGGAAGCCCTGCGGGAAAATAGCTCGGTGCCAGGA
T
>RRNA16S_NC_016058_371 count=1; cluster_weight=37; cluster=RRNA16S_NC_026302_19; cluster_score=0.983471; cluster_center=False;
AATTCTGGTGTCCAAGGCGTAGAGGAACCACACCAACCCATCCCGAACTTGGTGGTTAAA
CTCTACTGCGGTGACGATACTGTAGGGGAAGCCCTGCGGGAAAATAGCTCGGTGCCAGGA
T
>RRNA16S_NC_011152_40 count=2; cluster_weight=37; cluster=RRNA16S_NC_026302_19; cluster_score=0.983471; cluster_center=False;
AATTCTGGTGTCCCAGGCGTAGAGGAACCACACCAACCCATCCCGAACTTGGTGGTTAAA
CTCTACTGCGGTGACGATACTATAGGGGAAGCCCTGCGGGAAAATAGCTCGGTGCCAGGA
T
>RRNA16S_NC_021440_29 count=3; cluster_weight=37; cluster=RRNA16S_NC_026302_19; cluster_score=0.991736; cluster_center=False;
AATTCTGGTGTCCCAGGCGTAGAGGAACCACACCAACCCATCCCGAACTTGGTGGTTAAA
CTCTACTGCGGTGACGATACTGTAGGGGAAGCCCTGCGGGAAAATAGCTCGGTGCCAGGA
T
>RRNA16S_NC_011930_104 count=1; cluster_weight=37; cluster=RRNA16S_NC_026302_19; cluster_score=0.983471; cluster_center=False;
GATTCTGGTGTCCCAGGCGTAGAGGAACCACACCAACCCATCCCGAACTTGGTGGTTAAA
CTCTACTGCGGTGACGATACTGTAGGGGAAGCCCTGCGGGAAAATAGCTCGGTGCCAGGA
T
>RRNA16S_NC_014575_404 count=1; cluster_weight=37; cluster=RRNA16S_NC_026302_19; cluster_score=0.983471; cluster_center=False;
-ATTCTGGTGTCCCAGGCGTAGAGGAACCACACCAACCCATCCCGAACTTGGTGGTTAAA
CTCTACTGCGGTGACGATACTGTAGGGGAAGCCCTGCGGGAAAATAGCTCGGTGCCAGGA
T
>RRNA16S_NC_025906_136 count=1; cluster_weight=37; cluster=RRNA16S_NC_026302_19; cluster_score=0.900826; cluster_center=False;
TATTCTGGTGTCCTAGGCGTGGAGGAAGCACACCAATCCATACCGAATTTGGTGGTTAAA
CTCTACTGCGGTGACGATACTGTAGGGGAGGCCCTGCGGAAAAATAGCTCGACGCCAGGA
T
>RRNA16S_NC_015083_137 count=1; cluster_weight=37; cluster=RRNA16S_NC_026302_19; cluster_score=0.900826; cluster_center=False;
TATTCTGGTGTCCTAGTCGTAGAGGAAGCACACCAATCCATACCGAATTTGGTGGTTAAA
CTCTACTGCGGTGACGATACTGTAGGGGAGGCCCTGCGGAAAAATAGCTCGACGCCAGGA
T
>RRNA16S_NC_024635_134 count=1; cluster_weight=37; cluster=RRNA16S_NC_026302_19; cluster_score=0.909091; cluster_center=False;
TATTCTGGTGTCCTAGGCGTAGAGGAAGCACACCAATCCATACCGAATTTGGTGGTTAAA
CTCTACTGCGGTGACGATACTGTAGGGGAGGCCCTGCGGAAAAATAGCTCGACGCCAGGA
T
>RRNA16S_NC_020319_135 count=1; cluster_weight=37; cluster=RRNA16S_NC_026302_19; cluster_score=0.933884; cluster_center=False;
TATTCTGGTGTCCTAGGCGTGGAGGAACCACACCAATCCATCCCGAACTTGGTGGTTAAA
CTCTACTGCGGTGACGATACTGTAGGGGAAGCCCTGCGGAAAAATAGCTCGACGCCAGGA
T
>RRNA16S_NC_011163_131 count=1; cluster_weight=37; cluster=RRNA16S_NC_026302_19; cluster_score=0.942149; cluster_center=False;
TATTCTGGTGTCCTAGGCGTAGAGGAACCACACCAATCCATCCCGAACTTGGTGGTTAAA
CTCTACTGCGGTGACGATACTGTAGGGGAGGCCCTGCGGAAAAATAGCTCGGCGCCAGGA
T
>RRNA16S_NC_024038_132 count=1; cluster_weight=37; cluster=RRNA16S_NC_026302_19; cluster_score=0.950413; cluster_center=False;
TATTCTGGTGTCCTAGGCGTAGAGGAACCACACCAATCCATCCCGAACTTGGTGGTTAAA
CTCTACTGCGGTGACGATACTGTAGGGGAGGCCCTGCGGGAAAATAGCTCGGCGCCAGGA
T
>RRNA16S_NC_018766_50 count=2; cluster_weight=37; cluster=RRNA16S_NC_026302_19; cluster_score=0.925620; cluster_center=False;
TATTCTGGTGTCCTAGGCGTAGAGGAACCACACCAATCCATCCCGAACTTGGTGGTTAAA
CTCTACTGCGGTGACGATACTGTAGGGGAGGTCCTGCGGAAAAATAGCTCGACGCCAGGA
T
>RRNA16S_NC_024035_133 count=1; cluster_weight=37; cluster=RRNA16S_NC_026302_19; cluster_score=0.925620; cluster_center=False;
TATTCTGGTGTCCTAGGCGTAGAGGAACCACACCAATCCATCCCGAACTTGGTGGTTAAA
CTTTACTGCGGTGACGATACTGTAGGGGAGGTCCTGCGGAAAAATAGCTCGGCGCCAGGA
T
>RRNA16S_NC_024034_32 count=3; cluster_weight=37; cluster=RRNA16S_NC_026302_19; cluster_score=0.933884; cluster_center=False;
TATTCTGGTGTCCTAGGCGTAGAGGAACCACACCAATCCATCCCGAACTTGGTGGTTAAA
CTCTACTGCGGTGACGATACTGTAGGGGAGGTCCTGCGGAAAAATAGCTCGGCGCCAGGA
T