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First version including the rRNA detector

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Former-commit-id: 865e2626c7cd92ea596aedefe2b760b3eaaa9c77
Former-commit-id: 94a2e642328eb679660c6ac5a6cb6803c2083632
This commit is contained in:
Eric Coissac
2015-10-12 07:15:08 -03:00
parent bff0beaeee
commit 01c5880ace
530 changed files with 140563 additions and 19944 deletions
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data/rrna/RRNA_23S/00001_RRNA23S_NC_008116_121.align.fasta Normal file
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>RRNA23S_NC_008116_121 count=1; cluster_weight=1; cluster=RRNA23S_NC_008116_121; cluster_score=1.000000; cluster_center=True;
GTTCAAATAATTAAGGGCTTATGGTGGATACCTAGGCACCCAGAGACGAAGAAGGGCGTA
GCAAGCGACGAAATGCTTCGGGAAGCTGAGAACAAGCATTGATCCGGAGATGCCCGAATA
GGGGAACCTATTTGACTGCCTGCTGAATTGATAGGGAGGCAAGAGACAACCTGGCGAACT
GAAACATCTTAGTAGCCAGAGGAAAAGAAAGCAAAAGCGATTCCCTGAGTAGTGGCGAGC
GAAATGGGAACAGCCTAAACCGGCTTCCGTTTTGGGAGTCGGGGTTGTGGGAGAGCGACA
GTTGTTAAGAGTTACTAGACGAAGCAGCTGAGTCCTGCACCTGAGATGGTGAGAGTCCAG
TAGTTGAAAGTATCTCTAACAAACGCTAATTCCCGAGTAGCATGGGGCACGTGAAATCCC
GTGTGAATCAGCGAGGACCACCTCGTAAGGCTAAATACTCCTGGGTGACCGATAGTGAAG
TAGTACCGTGAGGGAAAGGTGAAAAGAACCCCCATCGGGGAGTGAAATAGAACATGAAAC
CGTAAGCCTCCAAGCAGTGGGAGGAGAATGGAATCTCTGACCGCGTGCCTGTTGAAGAAT
GAGCCGGCGACTTATAGGCAGTGGCCTGGTTAAGGCGTGAAGCCGGAGCCGTAGCGAAAG
CGAGTCTTTCTAGGGCGAATGTCACTGCTTATGGACCCGAACCCGGGTGATCTAACCATG
GCCAGGGTGAAGCTTGGGTGAAGCCAAGTGGAGGTCCGAACCGACTGATGTTGAAAAATC
AGCGGATGAGCTGTGGTTAGGGGTGAAATGCCACTCGAACTCGGAGCTAGCTGGTTCTCC
CCGAAATGCGTTGAGGCGCAGCGGTTGACTGGACTGCCTAGGGGTAAAGCACTGTTTCGG
TGCGGGCTGCGAAAGCGGTACCAAATCGAGGCAAACTCTGAATACTAGGCACGACATCGG
TCAGCCAGTAAGACGGTGGGGGATAAGCTTCATCGTCAAGAGGGAAACAGCCCAGACCAC
CAGCTAAGGCCCCTAAATGACCGCTCAGTGGCAAAGGAGGTGAGAGTGCAAAGACAGCCA
GGAGGTTTGCCTAGAAGCAGCCACCCTTGAAAGAGTGCGTAATAGCTCACTGATCGAGCG
CTCTTGCGCCGAAGATGAACGGGACTAAGCGGTCTGCCGAAGCTGTGGGATGTCCATTAG
GGCATCGGTAGGGGAGCGTTCCGCAAACGGGAGAAGCATCAGTGTAAACAGGTGTGGACG
AAGCGGAAGTGAGAATGTCGGCTTGAGTAACGCAAACATTGGTGAGAATCCAATGCCCCG
AAAACCCAAGGGTTCCTCCGCAAGGCTCGTCCACGGAGGGTGAGTCAGGGCCTAAGATCA
TGCCGAACGGCGCAGTCGATGGACAACAGGTCAAGATTCCTGTACTACCCCTTGTCGGCA
ATAAGAGGGACGGAGGAGGCTAAGCTAGCCGAATAATGGTCATCGGTTCAAGGGCCTGAA
AACCTGAGTACTAGGCACCTACGGGGCCGAAGTAGCTGATGCCACGCTCCCAAGAAAAGC
TCTTACGCCAATACTGACACGAAGTGTGTCTGAAAAAGCAAAGATTTGATTTCCTTTAAA
AGAAAAAAATCGTTGTTTTTTCAACAAAACAAAAATAAGACAAGTGCCCGAAAGGGTCCC
ATATATATGGGAGGTACCTGTACCCGAAACCGACACAGGTGGGTAGGTTGAGAATACCTA
GGGGCGCGAGACAACTCTCTCTAAGGAACTCGGCAAGATGGCCCCGTAACTTCGGGAGAA
GGGGTGCCCCTCTGGGGCCGCAGTGACCAGGCCCAGGCGACTGTTTACCAAAAACACAGG
TCTCCGCAAAGTCGCAAGACGACGTATGGGGGCTGACGCCTGCCCAGTGCCGGAAGGTTA
AGGAAGTCGGTGACTCGATACGAGGAAGCTGGCGACCGAAGCCCCGGTGAACGGCGGCCG
TAACTATAACGGTCCTAAGGTAGCGAAATTCCTTGTCGGGTAAGTTCCGACCCGCACGAA
AGGCGTAACGATCTGGGCACTGTCTCGGAGAGAGGCTCGGTGAAATAGACTTGTCTGTGA
AGATGCGGACTACCTGCACCTGGACAGAAAGACCCTATGAAGCTTTACTGTTCCCTGGGA
TGGGGTTTGGGCCCTTCTTGCGCAGTCTAGGTGGGAGGCGAAGACGGCGTCCTTCCGGGG
ACGCTCGAGCCGAAGATGAGAGACCACCCTAGAAGGGCTAGGATTCTAACCTTATGCCTA
GAAGAAGGCTAGGGGACAGTCCCAGGTAGACAGTTTCTATGGGGCGTAGGCCTCCCAAAG
GGTAACGGAGGCGTGCAAAGGTTTCCTCAGGCTGGACGGAAATCAGCCTTCGAGTGCAAA
GGCAGAAGGGAGCTTGACTGCAAGACCTACCCGTCGAGCAGGGACGAAAGTCGGCCTTAG
TGATCCGACGGTTCCGAGTGGAAGGGCCGTCGCTCAACGGATAAAAGTTACTCTAGGGAT
AACAGGCTGATCTTCCCCAAGAGTTCACATCGACGGGAAGGTTTGGCACCTCGATGTCGG
CTCTTCGCCACCTGGCGCGGTAGTACGTGCCAAGGGTTGGGCTGTTCGCCCATTAAAGCG
GTACGTGAGCTGGGTTCAGAACGTCGTGAGACAGTTTGGTCCATATCCGGTGCAGGCGTT
AGAGCATTGAGAGGATCTCTCCCTAGTACGAGAGGACCGGGAGGGACGCACCGCTGGTGT
GCCAGTTATCGTGCCAACGGTAAACGCTGGGTAGCCAAGTGCGGAGCGGATAACTGCTGA
AAGCATCTAAGTAGGAAGCCCACCTCAAGATGAGTGCTCTCCCCACGTACATACCCTATT
ATGGGAGTACGGAACGGGAAATCAATCCCGTCAAATGAGGTCACGGCAAGACCAGCCGTT
TGTTACAATAGGTGCCAGGTAGAAGTCCCGTAAGGGATGTAGCTGAGGCATCCTAACAGA
CCGAGAGATTTGAAC