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First version including the rRNA detector

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Former-commit-id: 865e2626c7cd92ea596aedefe2b760b3eaaa9c77
Former-commit-id: 94a2e642328eb679660c6ac5a6cb6803c2083632
This commit is contained in:
Eric Coissac
2015-10-12 07:15:08 -03:00
parent bff0beaeee
commit 01c5880ace
530 changed files with 140563 additions and 19944 deletions
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data/rrna/RRNA_23S/00001_RRNA23S_NC_012978_117.align.fasta Normal file
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>RRNA23S_NC_012978_117 count=1; cluster_weight=1; cluster=RRNA23S_NC_012978_117; cluster_score=1.000000; cluster_center=True;
GTCAAAGGACACAAGGCGTAGGGTGGATACCTAGGCACCTAGAGACGAAGAAGGGCGTGG
TACCGACGAAATGCTCCGGGGAGCTGGAAACAAGCGATAATCCGGAGATTCCCGAATAGG
GCAACCTCTTGAACTACCTGCTGAATTCATAGGCAGGAAAGAGACAACCCAGTGAACTGA
AACATCTTAGTAGCTGGAGGAGAAGAAAGCAAAAGCGATTCCCTGAGTAGCGGCGAGCGA
AAAGGGACAAGCCTAAACCAGTTTTCGAACTGGGGTCGTGGGAAAACAAAAAAAAATAAT
CGATTGAAACGAAGCAGCTGAATCCTGCACCAAAGATGGTGAAAGTCCAGTAGTTAAAAA
TTGAAATCAACTTGTTTATCCCGAGTAGCATGGGGCACGTGAAATCCCGTGTGAATCAGC
GAGGACCACCTCGTAAGGCTAAATACTCCTAGGTGACCGATAGTGAAAAAGTACCGTGAG
GGAAAGGTGAAAAGAACCCCTGTAGGGGAGTGAAAAAGAACATGAAACCCTACGCTCTCA
AACAGTGGGAGGATAACAATATCTGACCGCGTGCCTGTTGAAGAATGAGCCGGCGACTTA
GAAGAAGTGGCTTGGTTAAGGATAACTATCCGGAGCCAGAGCGAAAGCAAGTCTGAATAG
GGCGCTTAAAGGTCACTTTTTCTAGACCCGAACCCGGGTGATCTAACCATGACCAGGATG
AAGCTTGGGTAACACCACGTGAAGGTCCGAACCGACCGATGTTGAAAAATCGGCGGATGA
GTTGTGGTTAGCGGTGAAATACCAATCGAACTCGGAGCTAGCTGGTTCTCCCCGAAATGC
GTTGAGGCGCAGCGGTTTATGAGGCTGTCTAGGGGTAAAGCACTGTTTCGGTGCGGGCTG
CGAAAGCGGTACCAAATCGTGGCAAACTCTGAATACTAGATATGCTATTCATGAGCCAGT
GAGACGGTGGGGGATAAGCTTCATCGTCAAGAGGGAAACAGCCCAGATCACCAGCTAAGG
CCCCAAAATGGTCGTTAAGTGGCAAAGGAGGTGAGAATGCTGAAACAACCAGGAGGTTTG
CTTAGAAGCAGCCACCCTTTAAAGAGTGCGTAATAGCTCACTGGTGGAGCGTTCTTGCGC
CGAAAATGTCCGGGACTAAACGACCTGCCGAAGCTGTGGGATACTTAATTCACTTGGTTC
CTTTTCAAAAATTTCATTTGGTCCAAAAACTGGGTTTTTGAAAAGAAAAGGAAAAGGAAC
AAAAATGAAAAAAAATAAAGTATCGGTAGGGGAGCGTTCTGCTGTAGGGTGAAGCATTGA
TGTAAGTTAATGTGGACGAAGCGGAAGTGAGAATGTCGGCTTGAGTAACGCAAACATTGG
TGAGAATCCAATGCCCCGTAAACCTAAGGATTCCTCCACTAGGTTCGTCCATGGAGGGTG
AGTCAGGACCTAAGGCCAGGCCGAAAGGCGTAGCCGATGGAAAACAGGTTAATATTCCTG
TACTACTTTTTGTTGGTATCGAGGGACGGAGCAGGCAGAGGTAGGCCGGATTTGGATTTC
GGTGGAAACTTTCAAGGCGTTGAGAGATAGAAGAAAAACTATCTTAAGCTAAGAAGTGAT
ACGTTTCAAAAACTTTGTTTTTGAAATCTACTGGCTGTCATACTTCCAAGAAAAGCTCGC
ACTACTCACAAGACAAAAAGTACCTGTACCGAAAACCGACACAGGTAGGTTGGTAGAGAA
TACCAAGGGGCGCGAGACAACTCTCTCTAAGGAACTCGGCAAAATGACCCCGTAACTTCG
GGAGAAGGGGTGCCAAGTAAAAACTTGGCCGCAGTGACCAGGCCCAGGCGACTGTTTACC
AAAAACACAGGTCTCCGCAAAGTCGTAAGACAACATATGGGGGCTGACGCCTGCCCAGTG
CCGGAAGGTTAAGGAAGTTGGTTATTCTTGATAAAGAAAAAGCTAACGACCGAAGCCCCG
GTGAACGGCGGCCGTAACTATAACGGTCCTAAGGTAGCGAAATTCCTTGTCGGGTAAGTT
CCGACCCGCACGAAAGGCGTAACGATCTGGGCGCTGTCTCGGAGAGAGACTCGGTGAAAT
AGACATGTCTGTGAAGATGCGGACTACCTGCACCTGGACAGAAAGACCCTATGAAGCTTG
ACTGTAGCCTGAAATTGGGTTCGGGTTCTTCTTGCGCAGACTAGGTGGGAGGCGTTGAAA
GTTTCTTCTTGGGGAAACTGGAGCCAACAGTGAGAGACCACTCTGGAGGAGCTAGAATTC
TAATGGTGTTCCTTGAAGCAGGACACTTGACAGTTTCAGGTGGGCAGTTTGACTGGGGCG
GTCGCCTCCTAAAAGGTAACGGAGGCGTGCAAAGGTTCCCTCAGGCTGGACGGAAATCAG
CCGTAGAGTGTAAAGGCAGAAGGGAGCTTGACTGCAAGACCTACAAGTCGAGCAGGGGCG
AAAGCCGGCCTTAGTGATCCGACGGTTCCGTGTGGAAGGGCCGTCGCTCAACGGATAAAA
GTTACTCTAGGGATAACAGGCTGATCTTCCCCAAGAGTTCACATCGACGGGAAGGTTTGG
CACCTCGATGTCGGCTCATCGCAACCTGGGGCGGTAGTACGTCCCAAGGGTTGGGCTGTT
CGCCCATGAAAGCGGTACGTGAGCTGGGTTCAGAACGTCGTGAGACAGTTCGGTCCATAT
CCGGTGTAGGCGTTAGAGTATTGAGGGCACTCATCCATAGTACGAGAGGACCTGGATGAA
CACACCTCTGGTGTATCGGTTATTCTGCCAAGGGTAAACGCCGAGTAGCCAAGTGTGGAA
ATGATAACCGCTGAAGCATCTAAGTGGGAAGCTTAGCCCAAGATGAGTACTCTCCATTAA
GCCACGGGAAGACAACCCGGTTGATAGGCACCAGGTGTACGCACGGTAACGTGTTTAGCC
GAGGTGTACTAATAGGCTGATCGAATTTGAC