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First version including the rRNA detector

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Former-commit-id: 865e2626c7cd92ea596aedefe2b760b3eaaa9c77
Former-commit-id: 94a2e642328eb679660c6ac5a6cb6803c2083632
This commit is contained in:
Eric Coissac
2015-10-12 07:15:08 -03:00
parent bff0beaeee
commit 01c5880ace
530 changed files with 140563 additions and 19944 deletions
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data/rrna/RRNA_23S/00001_RRNA23S_NC_014573_255.align.fasta Normal file
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>RRNA23S_NC_014573_255 count=1; cluster_weight=1; cluster=RRNA23S_NC_014573_255; cluster_score=1.000000; cluster_center=True;
TTCAAACGAAGAAAGGCTTACGGTGGATACCTAGGCACCCAGAGACGATGAAGGGCGTAG
TAAGCGACGAAATGCTTCGGGGGTAGATCCGGAGATTCCCGAATAGGGCAACCTTTCAAA
CTGCTGCTGAATCCATGGGCAGGCAAGAGACAACCTGGCGAACTGAAACATCTTAGTAGC
CAGAGGAAAAGAAAGCAAAAGCGATTCCCGTAGTAGCGGCGAGCGAAATGGGAACAGCCT
AAACCGTGAAAACGGGGTTGTGGGAGAGCAATAAACTACATAAGTATAAGGGAGGGATGC
AACACGATGTGAGTGGGGCAGGCAAGAAATACGTAAAGGACAATACAAGCGTCGTGCTGC
TAAGTTAAGCAGTTAGAATGCTGCACCCTAGATGGTGAGAGTCCAGTGGCTGAAGCATCA
CTAGCTTACGTACGCTCTGACCCGAGTAGCATGGGACACGTGGAATCCCGTGTGAATCAG
CAAGGACCACCTTGCAAGGCTAAATACTCCTGGGTGACCGATAGCGAAGTAGTACCGTGA
GGGAAGGGTGAAAAGGACCCCTAGCGGGGAGTGAAATAGAACATGAAACCGTAAGCTCCC
AAGCAGTGGGAGGAGACTACCCTAGTCTAGTTCTCCCCCGTTGCCTATGAGCGTCGCGAA
CTCATAGGCAACGGGGGAGAACTAGACTGGGGTAGGGCTTTGACCGCGTGCCTGTTGAAG
AATGAGCCGGCGACTCATAGGCAGTGGCTTGGTTAAGGGAGCCCACCGGAGCCGTAGCGA
AAGCGAGTCTTCATGGGGCAAACAATTGTCACTGCTTATGGACCCGAACCTGGGTGATCT
ATCCATGACCAGGATGAAGCTTGGATGAAACTAAGCGGAGGTCCGAACCGACTGATGTTG
AAGAATCAGCGGATGAGTTGTGGTTAGGGGTGAAATGCCACTCGAACCCAGAGCTAGCTG
GTTCTCCCCGAAATGCGTTGAGGCGCAGCAGTTGACTGGATATCTAGGGGTAAAGCACTG
TTTCGGTGCGGGCCGCGCAAGCGGTACCAAATCGAGGCAAACTCTAAATACTAGATATGA
CCTTAAAAGACTCAAAAAAGAGAACAGGGGTCAAGGTCGGCCAGTGAGACGATGGGGGAT
AAGCTCCATCGTCGAGAGGGAAACAGCCCAGATCACCAGCTAAGGCCCCTAAATGACCGC
TCAGTGATAAAGGAGGTGGGGGTGCAGAGACAGCCAGGAGGTTTGCCTAGAAGCAGCTAC
CCTTGAAAGAGTGCGTAATAGCTCACTGATTGAGCGCTCTTGCGCCGAAGATGAACGGGG
CTAAGCGATCTGCCGAAGCTGTGGGATGTAAAAATGCATCGGTAGGGGAGCGTTCCGCCT
TAGGGGGAAGTACCCGCGCGAGCGGCGGTGGACGAAGCGGAAGCGAGAATGTCGGCTTGA
GTAACGCAAACATTGGTGAGAATCCAATGCCCCGAAAACCCAAGGATTCCTTCGAAAGGT
TCGTCCACGAAGGGTGAGTCAGGACCTAAGATCAGGCCGAAAGGCGTAGTCAATGGACAA
CAGGTTTAACATTCCTGTACTACCCCTAGTTGGTCCCGAGGGACGGAGGAGGCTAGGTTA
GCCGAAAGGTGGTTATCGGTTCAAGGACCAAAGGTGCCCCCGTATGGGGGGGTAAGAAGG
GGCAGAGAAAATGCCTCGAGCCAACGTTCGCTTTGCTTGGTTCACTTGCTTTGGTTCTCC
TTGCATGGAGTATATATAGATTTTGCAATCTTTGGAATCTATATATAATATAGATAAAGT
GACTAAGTAAAGTAACCAATGCCATACTTCCAGGAAAAGCTCGAACGACCGTCAACAAAA
GGGTACCTGTACCCGAAACCGACACAGGTGGGTAGGTAGAGAATACCTAGGGGCGCGAGA
CAACTCTCTCTAAGGAACTCGGCAAAATAGCCCCGTAACTTCGGGAGAAGGGGTGCCTCC
TAAGGAGGTCGCAGTGACCAGGCCCGGGCGACTGTTTACCAAAAACACAGGTCTCCGCAA
AGTCGTAAGACCATGTATGGGGGCTGACGCCTGCCCAGTGCCGGAAGGTCAAGGAAGTTG
GTGACCTGATGACAGGCGAGCCGGCGACCGAAGCCCCGGTGAACGGCGGCCGTAACTATA
ACGGTCCTAAGGTAGCAAAATTCATTGTCGGGTAAGTTCCGACCCGCACGAAAGGCGTAA
CGATCTGGGCACTGTCTCGGAGAGAGGCTCGGTGAAATAGACATGTCTGTGAAGATGCGG
ACTACCTGCACCTGGACAGAAAGACCCTATGAAGCTTCACTGTTCCCTGGGATTGGCTTT
GGGCCTTTCCTGCGCAGCTTAGGTGGAGGGCGAAGAAGGCCTCCTTCCGGGGGGGCACGA
GCCATCCGTGAGATACCACTCTGGAAGAGCTAGAATTCTAACCTTGTGTCAGAACCTACG
GGCCAAGGGACAGTCTCAGGTAGACAGTTTCTATGGGGCGTAGGCCTCCCAAAAGGTAAC
GGAGGCGTGCAAAGGTTTCTTCGGGTCGGACGGAGATTGGCCCGCGAGTGCAAAGGCAGA
AGGGAGCTTGACTGCAAGACCCACCCGTCGAGCAGGGACGAAAGTCGGCCTTAGTGATCC
GACGGTGCCGAGTGGAAGGGCCGTCGCTCAACGGATAAAAGTTACTCTAGGGATAACAGG
CTGATCTTCCCCAAGAGCTCACATCGACGGGAAGGTTTGGCACCTCGATGTCGGCTCTTC
GCCACCTGGGGCTGTAGTATGTTCCAAGGGTTGGGCTGTTCGCCCATTAAAGCGGTACGT
GAGCTGGGTTCAGAACGTCGTGAGACAGTTCGGTCCATATCCGGTGTGGGCGTTAGAGCA
TTGAGAGGACCTTTCCCTAGTACGAGAGGACCGGGAAGGACGCACCTCTGGTGTACCAGT
TATCGTGCCCATGGTAAACGCTGGGTAGCCAAGTGCGGAGCGGATAACTGCTGAAAGCAT
CTAAGTAGTAAGCCCACCCCAAGATGAGTGCTCTCCT