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First version including the rRNA detector

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Former-commit-id: 865e2626c7cd92ea596aedefe2b760b3eaaa9c77
Former-commit-id: 94a2e642328eb679660c6ac5a6cb6803c2083632
This commit is contained in:
Eric Coissac
2015-10-12 07:15:08 -03:00
parent bff0beaeee
commit 01c5880ace
530 changed files with 140563 additions and 19944 deletions
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data/rrna/RRNA_23S/00001_RRNA23S_NC_023775_497.align.fasta Normal file
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>RRNA23S_NC_023775_497 count=1; cluster_weight=1; cluster=RRNA23S_NC_023775_497; cluster_score=1.000000; cluster_center=True;
AACAAGCATTGATCCGAAGATTCCCGAATAGGGCAACCTTTTATACTTTTTGCTGAATTC
ATAAGCAAAAAAGAGACAACTCAGTGAACTGAAACATCTTATTAACTGAAGGAAAATAAA
GCAAACGCGATTTCCCGAGTAGTGGCGAGCGAAAAGGAAACAGCCTAAACCAATTTTTAA
AATTGGGGTTGTGGGATAACCAAAAAATATTTTTAAAAATATTTTTCAAGTAGTTATTTA
ATTATAAATTAGACGAAGCAGCTGAATCCTGCACCATAGATGGTGAAAGTCCAGTCGTCA
AAAATTCAAATTTAACTATGTGTTTTTCCCAAGTAGCACGGGACACGAGAAATCCCGTGT
GAATCAGCGAGGACCACCTCGTAAGGCTAAATACTCCTAGATGACCGATAGTGAAATAGT
ACCGTGAGGGAAAGGTGAAAAGAACCCCTGAAGGGGAGTGAAATAGAACATGAAATCCTA
TGCTGACAAACAGTGGGAGGTTTTTTTTAAACTGACCGCGTGCCTGTTGAAGAATGAGCC
GGCGACTTAGAAAAAGTGGCGTGGTTAAGGAAAAATTCCGAAGCCTTAGCGAAAGCGAGT
CTGAATAGGGCGATCAAATATTTTAATATTTACAATTTAGTCATTTTTTCTAGACCCGAA
CCCGGGTGATCTAACCATGACCAGGATGAAACTTGGGTGATACCAAGTGAAGGTCCGAAC
CGACCGATGTTGAAAAATCGGCGGATGAGTTGTGGTTAGCGGTGAAATACCAGTCGAACC
CGGAGCTAGCTGGTTCTCCCCGAAATGCGTTGAGGCGCAGCAGTACATCTAGTCTATCTA
GGGGTAAAGCACTGTTTCGGTGCGGGCTGTGAAAACGGTACCAAATCGTGGCAAACTCTG
AATACTAGAAATGACGGTGTAGTAGTGAGACTGTGGGGGATAAGCTCCATTGTCAAGAGG
GAAACAGCCCAGACCACCAGCTAAGGCCCCAAAATGGTAATGTAGTGACAAAGGAGGTGA
AAATGCAAACACAACCAGGAGGTTGGCTTAGAAGCAGCCATCCTTTAAAGAGTGCGTAAT
AGCTCACTGGTACTAGCGTTTTTGCGCCGAAAATGTACGGGACTTAATTATCTGCCGAAG
CTGTGGGATATATGAAAATAATGTATATATAAAAATACAATTTATATCGGTAGGGGAGCG
TTCTGCTTTAGGGTGAAGTTTAAATGTAAGTTTAGATGGACCAAGCAGAAGTGAGAATGT
CGGCTTGAGTAACGCAAACATTGGTGAGAATCCAATGCCCCGAAAACCTAAGGATTCCTT
CACTAGGTTCGTCCATGAAGGGTGAGTCAGGACCTAAGGCGAGGCCGAACGGCGTAGTCG
ATGGCAAACAGGTTAATATTCCTGTACTGTTTTGTATTTGATACCAGGGGACAGAAGAGG
TAACAATTAGCCGTTATTGGATTTCGGTGGAAACTTGCAAAGCTGGGAAAAGAAAAAAAA
CTTCTTCCTTTTTAAAGCTAACGAGTGATACGTTTGTATTTTATTTATAAAATATGAATT
AATTTCTTATCATATTCTCAAGAAAAGCCTGTATTATCTATAAATGCAAAACACCTGTAC
CATAAACCGACACAGGTAGGTAGGTAGAGTATACCAAGGGGCGCGAGATAACTCTCTCTA
AGGAACTCGGCAAAATGACCCCGTAACTTCGGGAGAAGGGGTGCCAAGGGGTGATTTTTC
ATCTTTTGGCCGCAGTGACCAGGCCCAGGCGACTGTTTATCAAAAACACAGGTCTCCGCA
AAGTCGTAAGACAACATATGGGGGCTGACGCCTGCCCAGTGCCGGAAGGTTAAAGAAGTA
GGTTATTCTTTTTTAAGAAAAAGCTTGCGACTGAAGCCCCGGTGAACGGCGGCCGTAACT
ATAACGGTCCTAAGGTAGCGAAATTCCTTGTCGGATAAGTCCCGACCCGCACGAAAGGCG
TAACGATCTGGGCGCTGTCTCGGAGAGAGACTCGGTGAAATAGACATGTCTGTGAAGATG
CGGACTACCTGCACCTGGACAGAAAGACCCTATGAAGCTTGACTGTAGCCTGAAATTGAA
TTTGGGTTTTTTTTGCGCAGACTAGGTGGGAGGCGTTGATAATTTTCTTTTGGGAAAATT
GGAGCCAACAGTGAGAGACCACTCTGGAAAAGCTAGAATTCTAATGGCGTTCCTTGAAGC
AGGACGCTTGACAGTTTCAGGTGGGCAGTTTGACTGGGGCGGTCATCTCTTAAAAGGTAA
CAGAGATGTGCAAAGGTTCCTTCAGGCTGGACGGAAATCAGCCGTAGAGTATAAAGGCAG
AAGGGAGCTTGACTGTAAGACCTACAAGTCAAACAGGGGCGAAAGCCGGCCTTAGTGATC
CGACGGTACCGAGTGGAAGGGCCGTCGCTAAACGGATAAAAGTTACTCTAGGGATAACAG
GCTGATCTTCCCCAAGAGTTCACATCGACGGGAAGGTTTGGCACCTCGATGTCGGCTCAT
CGCAACCTGGGGCGGTAGTACGTCCCAAGGGTTGGGCTGTTCGCCCATGAAAGCGGTACG
TGAGCTGGGTTCAGAACGT