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First version including the rRNA detector

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Former-commit-id: 865e2626c7cd92ea596aedefe2b760b3eaaa9c77
Former-commit-id: 94a2e642328eb679660c6ac5a6cb6803c2083632
This commit is contained in:
Eric Coissac
2015-10-12 07:15:08 -03:00
parent bff0beaeee
commit 01c5880ace
530 changed files with 140563 additions and 19944 deletions
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data/rrna/RRNA_23S/00001_RRNA23S_NC_024167_122.align.fasta Normal file
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>RRNA23S_NC_024167_122 count=1; cluster_weight=1; cluster=RRNA23S_NC_024167_122; cluster_score=1.000000; cluster_center=True;
GTTCAAGGGAAGAGGGGCTTACGGTGGATACCTAGGCATTCAGAGGCGAAGAAGGGCGTC
GTGGCCGACGAAATGCTCCGGGGAGCTGGGATTGTGTGAGGATCCGGAGATTCCCGAATG
GGGTAACCCCAATGTACTCGTGGGCTTTTGGCTTGCGAGGGGCAACCTGGCGAACTGAAA
CATCTTAGTAGCCAGAGGAAGAGAAAGCAAACGCGATTCCCCCAGTAGCGGCGAGCGAAG
AGGGAACAGCCTAAACCGGTTGATCCGGGGTTGTGGGAGGGCAGTTAGGGTGTTTCTTCG
CTAGACGAAGCGGTTGAGTTCCGCACCGCAGATGGTGAGAGTCCAGTAGTCAAAAGCGTC
ATTTCGCCCTTGTCCCAACCCGAGTAGCATGGGGCACGTGAAATCCCGTGTGAATCTGCG
AGGACCACCTCGTAAGGCTAAATACTCCTGGATGACCGATAGCGAACTAGTACCGTGAGG
GAAGGGTGAAAAGAACCCTGGAGAGGGAGTGAAAAAGACCATGAAACCGTAAGCTTACAA
GCGGTGGGAGGGGGCTTGAACCCCTGACCGCGTGCCTGTTGAAGAATGAGCCGGCGACTC
ATAGGCGGTGGCACGGCTAAGGCGATGCACGCCGAAACCGTAGCGAAAGCAAGTCTGACA
AGGGCCCATGTCATCGTTTATGGACCCGAACCCGAGTGATCTAACCATGGCCAGGGTGAA
GCTTTGGTGAGACTGAGTGGAGGCCCGTACCGACCGATGTTGAAAGATCGGCGGATGAGC
TGTGGTTAGGGGTGAAATGCCAATCGAACTCGGAGCTAGCTGGTTCTCCCCGAAATGCGT
TGAGGCGCAGCGGTGTTCGAGGGTGGGCCAGGGGTAAAGCACTGTTTCGGTGCGGGCTGC
GAGAGCGGTACCAAATCGAGGCAAACTCTGAATACTGGCCCTGCTTGCCGAACACCAGTG
AGACGAAGGGGGATAAGCTTCTTTGTCGAGAGGGGAACAGCCCAGACCATCGGCTAAGGC
CCCCAAATGGCCGCTAAGTGGCAAAGGATGTGGGAGTGCTCAGACAGCCAGGAGGTTTGC
CTAGAAGCAGCCACCCTTTAAAGAGTGCGTAATAGCTCACTGATCAAGCGCTCCCGCGCC
AAAGATGAACGGGACTCAAGCGGCCTGCCGAGGCCATGGGATGTAAAAAGCATCGGTAGG
GGAGCGTTCCGCGGCAGGTTGAAGCGTAAGCGAGAGCAGGCGTGGACGAGGCGGAAGTGA
GAATGTCGGCTTGAGTAACGCAAACACTGGTGAGAATCCAGTGCCCCGAAAACCCAAGGG
TTCCCCTGGAAGGCTCGTCCACGGGGGGTGAGTCAGGGCCTAAGGTGAGGCCGAAGGGCG
CAGCCGATGGACAACAGGCATACATTCCTGTACCTCTCCGGGCTGGGGACGAGGGACGGA
GCAGGCTCGGTTGGCCGAGGGATGGTATCTCGGTTGAAGGGTTCAAGGCGCGATGGGGGC
AGTGATCCTGGCCCTAGCTAAGGCCCGAGTTAGTAAAGCGTCAAGGCGCTGAAGAAACCT
ATGCCATGCTTCCAAGAAAAGCTCGTACCTCTTCAGGCTCGGAGGGCCTGTACCCGAGAC
CGACACAGGTGGGTGGGTAGAGAATACCTAGGGGCGCGAGGCAACCCTCTCTAAGGAACT
CGGCAAAATAGCCTCGTAACTTCGGGAGAAGAGGTGCTCCCCTCTTTGGGGGGGAGCCGC
AGGGACCAGGCCCAAGCGACTGTTTACCAAAAACACAGGTCTCCGCCAAGTTGAAAAACG
ATGTAAGGGGGCTGACGCCTGCCCAGTGCTGGAAGGTTAAGGAAGTTGGTGGCCCTCTCC
TTGAGAGAGGGGAAGCTGGCAACCGAAGCCCCAGTCAACGGCGGTCGTAACTATAACGAT
CCTAAGGTAGCGAAATTCATTGTCAGGTAAGTTCTGACCCGCACGAAAGGCGTAACGATT
TGGGCGCTGTCTCGGAGAGGGGCTCGGTGAAATAGACATGCCTGTGAAGATGCGGGCTAC
CTCCACTGGGACAGAAAGACCCTATGAAGCTTTACTGTTCCCTGGCATTGGGTCTCGGCC
CTCCCTGCGCAGCCTAGGTGGGAGGCACAGAAGCCCTTCTTCCGGGAAGGGCCAAGCCAT
CCGTGAGAGACCACCCTGGAAGGGCTAAGATCCTAAACCGATGCCCTATGATAGGCGTTG
GAACCGTGCCAGGCAGACAGTTTCTCTGGGGCAGAGGCCTCCCAAAGAGTAATGGAGGCG
TGCAAAGGTTCCCTCAGGCTGGACGGGAATCAGTTGTAGAGTGTAAAGGCAGAAGGGAGC
TTGACTGCAAGACCAACAAGTCGAGCAGGGACGAAAGTCGGCCTTAGTGATCCGACGGTG
CCGCGTGGAAGGGCCGTCGCTTATCGGATAAAAGTTACTCTAGGGATAACAGGCTGATCT
TCCCCAAGAGTCCACATCGACGGGAAGGTTTGGCACCTCGATGTCGGCTTAACACATCCT
GGGGCGGTAGCACGTCCCAAGGGTTGGGCTGTTCGCCCATCAAAGTGTTACATGAGCTGG
GTTCAGAACGTCGTGAGACAGTTTGGTCCATATCTAGTGGAGGCGTGAGAGCATTGAGGG
GCCATCTCCCTAGTACGAGAGGACCGGGAGGCACGCACCGCTGGTGTGCCAGTTCTCGTG
CCAACGGGACACGCTGGGTAGCCATGTGCGGAACGGATCACTGCTGAAAGCATCTAAGTA
GGAAGCCTACCCCAAGATGAGTGCTC