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First version including the rRNA detector

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Former-commit-id: 865e2626c7cd92ea596aedefe2b760b3eaaa9c77
Former-commit-id: 94a2e642328eb679660c6ac5a6cb6803c2083632
This commit is contained in:
Eric Coissac
2015-10-12 07:15:08 -03:00
parent bff0beaeee
commit 01c5880ace
530 changed files with 140563 additions and 19944 deletions
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data/rrna/RRNA_23S/00001_RRNA23S_NC_026448_202.align.fasta Normal file
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>RRNA23S_NC_026448_202 count=1; cluster_weight=1; cluster=RRNA23S_NC_026448_202; cluster_score=1.000000; cluster_center=True;
TTCAAAAGAATTAATGCTTGCGGTGGATGCCTAGGTACCTATAGGCTATGAAGGGCGTAA
TTATCAACGAAATGCTCCGGTAAGTTGACAATAAACATAAATCCGTAGATTCCCTAATGG
GTCAACCTTTTAAAATGCTGATTAATAAATGGTCAGATAATAGACAACCCGGTAAACTGA
AACATCTAAGTATCCGGAGGAAAATAAAGCAAAAAACAAGCACAGCGATTCCAAAAGTAG
CGGCGAGCGAAATTGGATCAGCCTAAACCGTAAAAAGGGGTTGTGGGAGAGCAATAAAGG
CATCGTGATGTTAGGTGAAGCGACGGAGTTGCGCACCCTAGAAGGTGATAGTCCAGTAGC
TAAAAGCATCGAGATATTATGCTCCGACCCGAGTAGCATGGGGCACGTGTAATCCCGTGT
GAATCAGCAAGGACCACCTTGCAAGGCTAAATACACCTTAGGTAACCGATAGCGGAGTAG
TACCGTGAGGGAAAGGTGAAAAGAACCCGTAAAAGTTGTGGGAGTGAAATAGAACATGAA
ACCGCGAGTTGACAAGCAGTGGGAGTATATTTTAATTTATAACCGCGTGCCTGTTGAAGA
ATGAGCCGGCGACTCGTGGGCAGTGGCTTGGTTAAGGTAAAGAAAATAAAAAAAAAAAAA
GATACTGTATCCATAGCGAAAGCAAGTCTTAATATGGCGATTGTCACTGTTTACGGACCC
GAACCTGGGTGATCTATCCATGACCAGGATGAAGCTTAGGTAAAACTTAGTAGAGGTCCG
AACCGACTGATGTTGAAAAATCTGCGGATGAGTTGTGGTTAGGGGTGAAATGCTACTCGA
ACCCAGAGCTAGCTGGTTCTCCCCGAAATGCGTTGAGGCGCAGCGGTTGACAGTACATCT
AGGGGTAAAGCAACTGTTTTGGTATGGGCCATATAAAATTGGTATCAAATCGAGGCAAAC
TATGAATACTAGAAAAGACCTTGTAGTCTAGGGTTGGCCAGTGAGACGATGGGGGATAAG
CTTAATCGTCAAAAAGGAAACAGCCATGATCACCAGCTAAGGCCCTTAAATGACTGCTAA
GTGATAAAGGAGGTGGGGGTGCATAGACAGCCAGGAGGTTTGCCTAGAAGCAGAAAACCT
TTAAAGAGTGCGTAATAGCTCACTGATCGAGTGCTCTCGCGCCTAAAATTAATGGGGCTA
AGCAATCTGCCGAAGCTGTGAGATGCAAAAGTACATCGGTAGGGGAGCGTTCCACCTTAG
GTTGAATCGCTCGCGCGAGCGAGCATGGACGAAGTGGAAGTGATAATGTCGGCTTGAGTA
ACGTAAACATTGGTGAGAATCCAATGCCCCGAAAATCCAAGGATTCCTCCGCTAGGCTCG
TCCTCAGAGGGTTAGTCAGGACCTAAAATAAGGCCAAAAGGCGCAGTTGATGGACAACAG
GCAAATATTCCTGTACTACCCCTTTTTGGTTACGAGGTACGGAGTAGGCTAGTTTAGTCG
AAATATGGTTATCGATTCAAGGGCGGAAGGCAACCTTTATTATTTTTATAGCCTTAAGAG
GTAGAGTAAATGCCTCGATAAAATGTCCAAGTATGAAGACACTATGCGGTGTTTAATTAA
ATTAGGGCACATTCCCAGGAAAAGCTTTAACAACCTTAAACTAGGGGTACCTGTACCTTA
AACCAACACAGGTAGGTGGGTAGAGAATACCCAGGGGCGCGAGACAACTCTCTCTAAGGA
ACTCGGCAAAATAACCCCGTAACTTCGGTATAAGGGGTGCCTTTTAGAAGGTCGCAGTGA
CCAAGCCCGGGCGACTGTTTAACAAAAACACAGGTCTCCGCAAAGTCGTAAGACCATGTA
TGGGGGCTGACGCCTGCCCAGTGCCGTAAGGTTAAAGGAGTCGATATACCTGAATTACAG
GGAAGTCGTTGACTAAAGCCTCGGTGAACGGCGGCCGTAACTATAACGGTCCTAAGGTAG
CGAAATTCCTTGTCGGGTAAGTTCCGACCCGCACGAAAGGCGTAACGATCTGGGCACTGT
CTCGGAGAGAGGCTCGGTGAAATAGACATGTCTGTGAAGATGCGGACTACCTGCACCTGG
ACAGAAAGACCCTATGAAGCTTTACTGTTACCTGAAATTGGCTTTAGTAATTTCTTGCGC
AGTTTAAGTGGGGGGATACATTATAAGGCCCCTTTCTAAAGGGGGCCAAGCCATTAGTGA
AATACCACTCTAGATGAACTATAAATCTAACCTTGCGTCAGAACCTACGGACCAAGGGAC
AATATTAGGGAGACAGTTTCTATGGGGCGTAGGCCTCCCAAAAGGTAACGGAGGCGCGCG
AAGGTTTCCTCGGGCCATTCGGATATTGGCTCTTAAAGCACAAAGGCATAAGGGAGCTTG
ACTGCAAGACCCACAAGTCAAGCAGAGACGAAAGTCGGCCTTAGCGATCCGGCGGTCCCG
GGTGGAAGGGCCGTCGATCAACGGATAAAAGTTACTCTAGGGATAACAGGCTGATCTTCC
CCGAGAGTTCATATCGACGGGGAGGTTTGGCACCTCGATGTCGGCTCTTCGCCACCTGGA
GCTGCAGCATGTTCCAAGGGTGGGGCTGTTCGCCCATTAAAGCGGTACGTGAGCTGGGTT
CAGAACGTCGTGAGACAGTTCGGTCCATATCCGGTGCGGGCGCTCGAGCATTGAGGGAAT
TTTTACCTAGTACGAGAGGACCGGTAAAGACGCACCTCTGGTGTACCAGTTATCATACCT
ATGGTAAATGCTGGGTAGCTAAGTGCGAGTTGGATAACTGCTGAAAGCATCTAAGTAGCA
AGCCCAACCCAAGATGAGTGCTCTAAA