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First version including the rRNA detector

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Former-commit-id: 865e2626c7cd92ea596aedefe2b760b3eaaa9c77
Former-commit-id: 94a2e642328eb679660c6ac5a6cb6803c2083632
This commit is contained in:
Eric Coissac
2015-10-12 07:15:08 -03:00
parent bff0beaeee
commit 01c5880ace
530 changed files with 140563 additions and 19944 deletions
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data/rrna/RRNA_23S/00001_RRNA23S_NC_026449_196.align.fasta Normal file
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>RRNA23S_NC_026449_196 count=1; cluster_weight=1; cluster=RRNA23S_NC_026449_196; cluster_score=1.000000; cluster_center=True;
TTAAAATTTAATAAATATGCTGATGGTGGATACCTAGGCACCCAGAGACGATGAAGGGCG
TATAAATTGACGAAATGCTCTGGTGAGTTGACTATAAGCATAGATCCAGAGATTCCCGAA
TGGGTCAACCCTTATAAATTCTGCTTAATATATGTGGCAGATAATAGATAACCCGGTGAA
CTGAAACATCTTAGTATCCGGAGGAAAATAAAGCAAAAAAAAAAGCGATTCTCAAAGTAG
CGGCGAGCGAAATGGGATTAGTCTAAACCGTTAAAATGGGGTTGTGGGAGAGCTATAAAG
GCGTCTTGCTGCTAAGCGAAGCGACGGAATTACGCACCCTAGAAGGTGAGAGTCCGGTAG
CTAAAAGCATCAAAAAGCTTACGCTCTGACCCGAGTAGCATGGGGCACGTGAAATCCCGT
GTGAATCAGCAAGGACCACCTTGCAAGGCTAAATACTCCTTGGGTGACCGATAGCGTAGT
AGTACCGTGAGGGAAGGGTGAAAAGAACCCCAAAACATAGGGGAGTGAAATAGAGCATTA
AACCATTAGCTAACAAGCAGTGGGAGGATATTCTTATTTCTGACCGCGTGCCTGTTGAAG
AATGAGCCGGCGACTCGTGAGCAGTGGCTTGGTTAAGGGAAATAAAATACATCGTATCCA
TAGCGAAAGCGAGTCTAAATATGGCGCTATTGTCACTGTTTACGGACCCGAACCTGGGTG
ATCTATCCATGACCAGGATGAAGCTTGGGTGAAACTAAGTGGAGGTCCGAACCGACTGAT
GTTGAATAATCAGCGGATGAGTTGTGGTTAGGGGTGAAATGCTACTCGAACCCAGAGCTA
GCTGGTTCTCCCCGAAATGCGTTGAGGCGCAGCGGTTGGCTGGATATCTAGGGGTAAAGC
ACTGTTTCGGTGCGGGCCGTGAGATCGGTATCAAATCGAGGCAAACTCAGAATACTATAT
ATGACTCCGGCGGGGAGTAAGGTCGACCAGTGAGACGATGGGGGATAAGCTTCATTGTCA
AGAGGGAAACAGCCCGGATCACCAGCTAAGGCCCCTAAATGACCGCTCAGTGATGAAGGA
AGTAGGGGTGCATAAACAGCCAGGAGGTTTGCCTAGAAGCAGCAACCCTTTAAAGAGTGC
GTAATAGCTCACTGATCGAGCGCTTTCGCGCCGAAGATTAATGGGGCTAAGCGATCTGCC
GAAGCTGTGGGATGCAAAAACGCATCGGTAGGTGAGCGTTCCGCCTTAGATCGAATCGCC
CACGCGAGTGGGCGTGGACGAAGTGGAAGTGAAAATGTCGGCTTGAGTAACGCAAACATT
GGTGAGAATCTGATGCCCCGAAAATCCAAGGATTCCTCCACAAAGTTCGTCCATGGAGGG
TTAGTCAGGACCTAAGATAAGGCCGAAGGGCGTAGTCGATGGATAACAGCCAAATATTCC
TGTACTACCCCTTATTGGTCCCGAGGTACGGAGTAGGCTAGGTTAGTCGAAATTAGGTTA
TCGATGAAAGTATGTAGGAGTAACGCTATCTTTTTTAAAATCAATAAGGGGTAGAGTAAA
TGCCTCGAGCTAATGTCCGAGCGTGTAGGCGCTATGCGTCGCTGAAGTAACCAATGCCAT
ACTCCCAGGAAAAGCTCTAAAAAACTTAAATAAGGGGTACCTGTACTCTAAACTGACACA
GGTGGGTGGGTAGAGAATACCCAGGGGCGCGAGACAACTCTCTCTAAGGAACTCGGCAAA
ATAGCTCCGTAACTTCGGTATAAGGAGTACCTCCTAATAAAAAAAAATAAGATGAGGTCG
CAGTGACTAGGCCCGGGCGACTGTTTAACAAAAACACAGGTCTCCGCAAAATCGTAAGAC
CATGTATGGGGGCTGACGCCTGCCCAGTGCCGGAAGGTTAAGGAAGTTGGTGGAACTTGA
TGGACAGGTGAGCCGACAACCAAATCCTCGGTGAACGGCGGCTGTAACTATAACGGTCCT
AAGGTAGCGAAATTCCTTGTCGGGTAAGTTCCGACCCGCACGAAAGGCGTAACGATCCGG
GCACTGTCTCGGAGAGAGGCTCGGTGAAATAGACATGTCTGTGAAGATGCGGACTACCCA
CACCCGGACAGAAAGACCCTATGAAGCTTTACTGTTACCTGGAATTGGCTTTGGTACTTT
CCTGCGCAGCTTAAGTGGGGGGATAAATGATAAAGCCCATAGGGGCTCCAATCCATCAGT
GAGATACCACTCTGGAGGAGCTATAATTCTAACCTTGTGTCAGAACACACGGGCTAAGGG
ACAGTTTCAGGTAGACAGTTTCTATGGGGCGTAGGCCTCCCAAAAGTTAACGGAGGCGCG
CAAAGGTTTCCTCGGGCCGTATGGGTACTGGCCTTCGAGTGCAAGGGCATAAGGTAGCTT
GACTGCAAGACACGCTCGTCGAGCAGGGACGAAAGTCGGCCTTAGTGATCCGGTGGTGCC
GGGTGGAAGGGCCACCGATCAACGGATAAAAGTTACTCTAGGGATAACAGGCTGATCTTC
CCCGAGAGTTCACATCGACGGGAAGGTTTGGCACCTCGATGTCGGCTCTTCGCCACCTGG
GGCTGAAGTGTGTTCCAAGGGTTGGGCTGTTCGCCCATTAAAGCGGTACGTGAGCTGGGT
TCAGAACGTCGTGAGACAGTTCGGTCCATATCCGGTGTGGGCGCTAGAGCATTGAGGGGT
ATTTTCCCTAGTACGAGAGGACCGGGAAGGACGCACCTCTGGTGTACCAGTTATCGTGCC
TACGGTAAATGCTGGGTAGCTAAGTGCGGGGTGGATAACTGCTGAAAGCATATAAGTAGT
AAGCCCACCCCAAGATGAGTGCTCTCCT