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First version including the rRNA detector

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Former-commit-id: 865e2626c7cd92ea596aedefe2b760b3eaaa9c77
Former-commit-id: 94a2e642328eb679660c6ac5a6cb6803c2083632
This commit is contained in:
Eric Coissac
2015-10-12 07:15:08 -03:00
parent bff0beaeee
commit 01c5880ace
530 changed files with 140563 additions and 19944 deletions
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data/rrna/RRNA_23S/00002_RRNA23S_NC_018569_97.align.fasta Normal file
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>RRNA23S_NC_018569_97 count=1; cluster_weight=2; cluster=RRNA23S_NC_018569_97; cluster_score=1.000000; cluster_center=True;
GATGTCATGGAGAGTTTGATCCTGGCTCAGGATGAACGCTGGCGGCATGCCTAACACATG
CAAGTCGAACGAGGGTGGTTCGCTTTGCGAGTCACCCTAGTGGCGGACGGGTGAGTAACG
CGTAAGGACCTGCCCCGAGGAGAGGGATACCAACTGGAAACGGTTGTTAATACCTCATGT
GCTGAGGAGTGAAACGGTGTAACAACCGCCTAGGGATGGGCTTGCGTCTGATTAGCTAGT
TGGTGGGGCAAAGGCCTACCAAGGCAATGATCAGTAGCTGGTTTGAGAGGACGATCAGCC
ACACTGGGACTGAGACACGGCCCAGACTCCTACGGGAGGCAGCAGTGAGGAATTTTCCGC
AATGGGCGCAAGCCTGACGGAGCAATGCCGCGTGGAGGAGGAAGGCCCGTGGGTTGTAAA
CTCCTTTTCTTAGAGAAGAAGCCCTGACGGTATCTAAGGAATAAGCATCGGCTAACTCCG
TGCCAGCAGCCGCGGTAATACGGAGGATGCGAGCGTTATCCGGAATCATTGGGCGTAAAG
GGTCCTGAGGTGGCCTGCCCAGTCCACTGTGAAAGATCGGGGCTCAACCCCGAGGGTGCG
GTGGAAACTAGCAGGCTAGGATACGGTAGGGGCAGGGGGAATTCCCGGTGTAGCGGTGAA
ATGCATAGATATCGGGAGGAACACCAAGGGCGAAGGCACCCTGCTGGGCCGATATTGACA
CTGACAGACGAGAGCTAGGGGAGCGAATGGGATTAGATCCCCCAGTAGTCTTAGCCGTAA
ACGATGGATACCAGGTGTTGACCGTCTCAAAACGGGCAGTGCCGCAGCTAACGCGTTAAG
TATCCCGCCTGGGGAGTATGCCCGCAAGGGTGAAACTCAAAGGAATTGACGGGGGCCCGC
ACAAGCGGTGGAGCATGTGGTTTAATTCGATGCAACGCGAAGAACCTTACCAGGGCTTGA
CATGCCGTTCAACCCCCCGAGAGGGGGG-------CCGCCCCCCAT---GGGCACATGCC
CATGGACGGGAGCGGACACAGGTGGTGCATGGCTGTCGTCAGCTCGTGTCGTGAGATGTT
GGGTTAAGTCCCGCAACGAGCGCAACCCTTGTCCTCAGTTGCCA-TCCCGCAAGGGAGAA
ACTGGGGAGACTGCCGGTGACAAGCCGGAGGAAGGTGAGGATGACGTCAAGTCAGCATGC
CCCTTACGCCCTGGGCTACACACGTGCTACAATGGCCGGGACAAAGGGATGCGACCCCGC
GAGGGGAAGCCAACCTCAAAAACCCGGTCTCAGTTCGGATTGCAGGCTGCAACTCGCCTG
CATGAAGTCGGAATCGCTAGTAATCGCCGGTCAGCCATACGGCGGTGAATACGTTCCCGG
GCCTTGTACACACCGCCCGTCACACTACTGGAGTCGGCCCGGCCCGAAGCCGTTGCCCCA
ACCCGCCTTAGGGAGGGGGGCGTCTAAGGCAGGGCTGGTGACAGGAGTGAAGTCGTAACA
AGGTAGCCGTACTGGAAGGTGCGGCTGGATCACCTCCTT
>RRNA23S_NC_015084_98 count=1; cluster_weight=2; cluster=RRNA23S_NC_018569_97; cluster_score=0.931525; cluster_center=False;
GATGTCATGGAGAGTTTGATCCTGGCTCAGGATGAACGCTGGCGGCATGCTTAACACATG
CAAGTCGAACGAAGATGCCAACCTCTGGTTGGCATCTTAGTGGCGGACGGGTGAGTAACG
CGTAAGAACCTGCCCCTGGGAGAGGGATACCAACTGGAAACGGTTGTTAATACCTCATAG
GCTGAGGAGTGAAATGGT-TAAC-ACCGCCTAGGGATGGGCTTGCGTCTGATTAGCTAGT
TGGTGGGGCAAAGGCCTACCAAGGCAATGATCAGTAGCTGGTCTGAGAGGACAATCAGCC
ACACTGGGACTGAGACACGGCCCAGACTCCTACGGGAGGCAGCAGTGAGGAATTTTCCGC
AATGGGCGCAAGCCTGACGGAGCAATGCCGCGTGGAGGATGAAGGCCCGTGGGTTGTAAA
CTCCTTTTCTTAGAGAAGAAGCCCTGACGGTATCTAAGGAATAAGCATCGGCTAACTCCG
TGCCAGCAGCCGCGGTAATACGGAGGATGCAAGCGTTATCCGGAATCATTGGGCGTAAAG
GGTCCTGAGGTGGTTTGCTAAGTCTACTGTGAAAGATCAGGGCTCAACCCTGAAGATGCG
GTGGAAACTGGCAGGCTAGAATACGGTAGGGGCAGGGGGAATTCCCGGTGTAGCGGTGAA
ATGCATAGATATCGGGAAGAACACCAAAGGCGAAGGCACCCTGCTGGGCCGATATTGACA
CTGACAGACGAAAGCTAGGGGAGCAAATGGGATTAGATACCCCAGTAGTCCTAGCCGTAA
ACGATGGATACTAAGTGCTGAACGACCAAAAACGTGCAGTGCTGCAGCTAACGCGCTAAG
TATCCCGCCTGGGGAGTATGCCCGCAAGGGTGAAACTCAAAGGAATTGACGGGGGCCCGC
ACAAGCGGTGGAGCATGTGGTTTAATTCGATGCAACGCGAAGAACCTTACCAGGGCTTGA
CATGCCGTCTACCCCCTTGAAAGAGGGGGGCAACCCCGTCCCTCATTGAGGAGAC-----
----GGTGGAAACGGACACAGGTGGTGCATGGCTGTCGTCAGCTCGTGTCGTGAGATGTT
GGGTTAAGTCCCGCAACGAGCGCAACCCTTGTCTTTAGTTGCCACTCCCTTGAGGAGGAA
ACTAGAGAGACTGCCGGTGACAAGCCGGAGGAAGGTGAGGATGACGTCAAGTCAGCATGC
CCCTTATGCCCTGGGCTACACACGTGCTACAATGGCCGGGACAAAGGGATGCAACCCTGC
GAGGGGAAGCCAACCCCAAAAACCCGGTCTCAGTTCGGATTGCAGGCTGCAACTCGCCTG
CATGAAGTCGGAATCGCTAGTAATCGCCGGTCAGCCATACGGCGGTGAATACGTTCCCGG
GCCTTGTACACACCGCCCGTCACACTACTGGAGTTGGCCCGGCCCGAAGTCGTTTCCCCA
ACCCTC----GGGAGGGGGACGCCTAAGGCAGGGCTGGTAACAGGAGTGAAGTCGTAACA
AGGTAGCCGTACTGGAAGGTGCGGCTGGATCACCTCCTT