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First version including the rRNA detector

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Former-commit-id: 865e2626c7cd92ea596aedefe2b760b3eaaa9c77
Former-commit-id: 94a2e642328eb679660c6ac5a6cb6803c2083632
This commit is contained in:
Eric Coissac
2015-10-12 07:15:08 -03:00
parent bff0beaeee
commit 01c5880ace
530 changed files with 140563 additions and 19944 deletions
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data/rrna/RRNA_5S/00001_RRNA5S_NC_024169_49.align.fasta Normal file
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>RRNA5S_NC_024169_49 count=1; cluster_weight=1; cluster=RRNA5S_NC_024169_49; cluster_score=1.000000; cluster_center=True;
CAAGGGCTTATGGTGGATACCTAGGCACCCAGAGACGAAGAAGGGCGTGGTCAGCGACGA
AATGCTCCGGGGAGCCGATAGCCTGCTTTGATCCGGAGATTCCCGAATGGGGTAACCTCT
TGAACTCCTGCTGAATCTATAGGCAGGGAAGAGCCAACCTGGCAAACTGAAACATCTTAG
TAGCCAGAGGAACAGAAAGCAAAAGCGATTCCCGAAGTAGTGGCGAGCGAAATGGGAACA
GCCTAAACCGTGTAAGCGGGGTTGTGGGGGGATCTGTTAAAATCAGGAAGATATAGCTGA
AGGTGAAGCAGCTGAGTCCTGCACCCAAGATGGTGAGAGTCCAGTAACTAAAAGCTTTCC
TGGTTTTAGTCCTAACCCGAGTAACATGGGGCACGTGAAACCCTGTGTGAATCTGCGAGG
ACCACCTCGTAAGGCTAAATACTCCTGGGTGACCGATAGTGAAGTAGTACCGTGAGGGAA
AGGTGAAAAGAACCCCAACCGGGGAGTGAAAAAGAACATGAAACCGTAAGCCTACAAGCA
GTGGGAGGAGAATAGAATCTTTGACCGCGTGCCTGTTGAAGAATGAGCCGGCGACTTATA
GGCAGTGGCCAGGTTAAGGGCAACACCGGAGCCGCAGCGAAAGCGAGTCTAAATAAGGCG
CATGTCACTGTTTATGGACCCGAACCCGGGTGATCTATCCATGGCCAGGATGAAGCTTAG
GTGAAACTACGTGGAGGTCCGAACCGACTGATGTTGAAAAATCAGCGGATGAGCTGTGGA
TAGGGGTGAAATGCCATTCGAACCCGGAGCTAGCTGGTTCTCCCCGAAATGCGTTGAGGC
GCAGCGGTTAGCCAGGCTGTCTAGGGGTAAAGCACTGTTTCGGTGCGGGCTGCGAGAGCG
GTACCAAATCGAGGCAAACTCTGAATACTAGACATTGCAACGGGCTAGCCAGTGAGACGG
TGGGGGATAAGCTTCATCGTCGAGAGGGAAACAGCCCAGATCACCAGTTAAGGCCCCTAA
ATGACCGCTCAGTGATAAAGGAGGTGAGAGTGCAAAGACAGCCAGGAGGTTTGCCTAGAA
GCAGCTACCCTTAAAAGAGTGCGTAATAGCTCACTGATCAAGCGCTCTCGCACCGAAGAT
GAATGGGACTAAGCGGTCTGCCGAAGCTGTGGGATGCCTGAAAAGGCATCGGTAGGGGAG
CGTTCCGCCATAGGGAGAAGCGCCAGTGAAAGCAGGCGTGGACGAAGCGGAAGTGAGAAT
GTCGGCTTGAGTAACGCACACATAGGTGAGAATCCTATGCCCCGAAAACCCAAGGTTTCC
TTTGCAAGGCTCGTCCACGGAGGGTTAGTCAGGGCCTAAGATCAGGCCGAAAGGCGTAGT
CGATGGACAACAGGTTAATATTCCTGTACCACTTGTTTGTTGGCCATGAGAGGGACGGAG
GAGGCTAGGCTGGCCGAAGATTGGTCATCGGCTCAAGGGTTGAAAGGCCCGAGTACTAGG
TGCTACGGTATCAAAGCAGTTAATGCCACGCTCCCAAGAAAAGCTCTTCAAGCTGTAAAA
GCAAATAAGTGCCTGTACCTAAACCGACACAGGTGGGTAGGTTGAGAATACCTAGGGGCG
CGAGATAACTCTCTCTAAGGAACTCGGCAAGATGGCCCCGTAACCTAGGGAGAAGGGGTG
CCTCCTCTAAGCAAGAGGAGGCCGCAGTGACCAGGCCCAGGCGACTGTTTACCAAAAACA
CAGGTCTCCGCAAAGTCGTAAGACGACGTATGGGGGCTGACGCCTGCCCAGTGCCGGAAG
GTTAAGGAAGTTGGTGACCTGAATACAGGGAAGCTGGCAACCGAAGCCCCGGTGAACGGC
GGCCGTAACTATGACGGTCCTAAGGTAGCGAAATTCCTTGTCGGGTAAGTTCCGACCCGC
ACGAAAGGCGTAACGATCTGGGCACTGTCTCGGAGAGAGACTCGGTGAAATAGACTTGTC
TGTGAAGATGCGGACTACCTGCACCTGGACAGAAAGACCCTATGAAGCTTTACTGTTCCC
TGGGATGGGCTTTGGGCCCTTCTTGCGCAGCTTAGGTGGAAGGCTAAGAAGGCTTTCTTC
CGGGAAAGCCAGAGCCAACAGTGAGATACCACCCTAGAAGGGCTAGGATTCTAACCTTAC
GCCTACAAGCAGGCTAAGGGACAGTCCCAGGTAGACAGTTTCTATGGGGCGTAGGCCTCC
CAAAAAGTAACGGAGGCGTGCAAAGGTTTCCTCAGGCTGGACGGAAATCAGCCCTCGAGT
GCAAAGGCAGAAGGGAGCTTGACTGCAAGACCCACAAGTCGAGCAGGGACGAAAGTCGGC
CTTAGTGATCCGACGGTGCCGAGTGGAAGGGCCGTCGCTCAACGGATAAAAGTTACTCTA
GGGATAACAGGCTGATCTTCCCCAAGAGTTCACATCGACGGGAAGGTTTGGCACCTCGAT
GTCGGCTCTTCGCCACCTGGCGCGGTAGTACGTGCCAAGGGTTGGGCTGTTCGCCCATTA
AAGCGGTACGTGAGCTGGGTTCAGAACGTCGTGAGACAGTTTGGTCCATATCCGGTGCAG
GCGTTAGAGCATTGAGGGGATCCCTCCTTAGTACGAGAGGACCGGGAGGGACGCACCGCT
GGTGTACCAGTTATCGTGCCAACGGTACACGCTGGGTAGCCAAGTGCGGAGCGGATAACT
GCTGAAAGCATCTAAGTAGGAAGCCCACCCCAAGATGAGTGCTCTCCATATCTAAGCTAA
CCTTCCTTAGGTCGGTTTGCTGAAATACAAGGTCACGGCAAGACTAGCCGTTACAAAGAT
AGGCGACAAGTAGAAGCACAGCAATGTGTGCAGCTGAGTCGTCCTAACAGACCGAGAGGT
TTGAAC