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First version including the rRNA detector

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Former-commit-id: 865e2626c7cd92ea596aedefe2b760b3eaaa9c77
Former-commit-id: 94a2e642328eb679660c6ac5a6cb6803c2083632
This commit is contained in:
Eric Coissac
2015-10-12 07:15:08 -03:00
parent bff0beaeee
commit 01c5880ace
530 changed files with 140563 additions and 19944 deletions
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56
data/rrna/RRNA_5S/00035_RRNA5S_NC_023113_8.align.fasta Normal file
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>RRNA5S_NC_024157_213 count=1; cluster_weight=35; cluster=RRNA5S_NC_023113_8; cluster_score=0.903226; cluster_center=False;
ATCCTGGCGCCGAGCTATTTTCCCGCAGGGCTCCCCCTGCAGTATCGTCACCGCAGTAGA
GTTTCACCACCAAGTTCGGGATGGATCGGTGTGGTTCCTCCACGCCTAAGACACCAGAAT
ATC
>RRNA5S_NC_024845_25 count=2; cluster_weight=35; cluster=RRNA5S_NC_023113_8; cluster_score=0.958678; cluster_center=False;
ATCCTGGCGTCGAACTATTTTTCCACAGGACCTCCCCTACAGTATCGTCACCACAGTCGA
GTTTAACCACCAAATTCGGGATGGATTGGTGTGGTTCCTCTACGCCTAGGACACCAGAAT
A--
>RRNA5S_NC_024106_13 count=4; cluster_weight=35; cluster=RRNA5S_NC_023113_8; cluster_score=0.966942; cluster_center=False;
ATTCTGGCATCGAGCTATTTTGCCGCAGGACCTCCCCTACAGTATCGTCACCGCAGTAGA
GTTTAACCACCAAATTCGGGATGGATTGGTGTGGTTCCTCTACGCCTAGGACACCAGAAT
A--
>RRNA5S_NC_023356_226 count=1; cluster_weight=35; cluster=RRNA5S_NC_023113_8; cluster_score=0.983471; cluster_center=False;
ATTCTGGCGTCGAGCTATTTTTCCGCAGGACCTCCCCTACAGTATCGTCACCGCAGTAGA
GTTTAACCACCAAGTTCGGGATGGATTGGTGTGGTTCCTCTACGCCTAGGACACCCGAAT
A--
>RRNA5S_NC_018541_28 count=2; cluster_weight=35; cluster=RRNA5S_NC_023113_8; cluster_score=0.991736; cluster_center=False;
ATTCTGGCGTCGAGCTATTTTTCCGCAGGACCTCCCCTACAGTATCGTCACCGCAGTAGA
GTTTAACCACCAAGTTCGGGATGGATTGGTGTGGTTCCTCTACGCCTAGGACACCAGAAT
A--
>RRNA5S_NC_019616_219 count=1; cluster_weight=35; cluster=RRNA5S_NC_023113_8; cluster_score=0.958678; cluster_center=False;
ATCCTGGCGTCGAGCTATTTTTCCGCAGGACCTCCCCTCCAGTATCGTCACCGCAGTAGA
GTTTAACCACCAAATTCGG--TGGAT-GGTGTGGTTCCTCTACGCCTAGGACACCAGAAT
A--
>RRNA5S_NC_012224_217 count=1; cluster_weight=35; cluster=RRNA5S_NC_023113_8; cluster_score=0.983471; cluster_center=False;
ATCCTGGCGTCGAGCTATTTTTCCGCAGGACCTCCCCTACAGTATCTTCACCGCAGTAGA
GTTTAACCACCAAGTTCGGGATGGATTGGTGTGGTTCCTCTACGCCTAGGACACCAGAAT
---
>RRNA5S_NC_016736_218 count=1; cluster_weight=35; cluster=RRNA5S_NC_023113_8; cluster_score=0.991736; cluster_center=False;
ATCCTGGCGTCGAGCTATTTTTCCGCAGGACCTCCCCTACAGTATCTTCACCGCAGTAGA
GTTTAACCACCAAGTTCGGGATGGATTGGTGTGGTTCCTCTACGCCTAGGACACCAGAAT
A--
>RRNA5S_NC_023102_212 count=1; cluster_weight=35; cluster=RRNA5S_NC_023113_8; cluster_score=0.991736; cluster_center=False;
ATCCTGGCATCGAGCTATTTTTCCGCAGGACCTCCCCTACAGTATCGTCACCGCAGTAGA
GTTTAACCACCAAGTTCGGGATGGATTGGTGTGGTTCCTCTACGCCTAGGACACCAGAAT
A--
>RRNA5S_NC_023464_214 count=1; cluster_weight=35; cluster=RRNA5S_NC_023113_8; cluster_score=0.991736; cluster_center=False;
ATCCTGGCGTCGAGCTATTTTTCCGCAGGACCTCCCCTACAGTATCGTCACCGCAGTAGA
GTTTAACCACCAAATTCGGGATGGATTGGTGTGGTTCCTCTACGCCTAGGACACCAGAAT
A--
>RRNA5S_NC_025641_216 count=1; cluster_weight=35; cluster=RRNA5S_NC_023113_8; cluster_score=0.991736; cluster_center=False;
ATCCTGGCGTCGAGCTATTTTTCCGCAGGACCTCCCCTACAGTATCGTCACCGCAGTAGA
GTTTAACCACCAAGTTCGGGATGGGTTGGTGTGGTTCCTCTACGCCTAGGACACCAGAAT
A--
>RRNA5S_NC_016468_220 count=1; cluster_weight=35; cluster=RRNA5S_NC_023113_8; cluster_score=0.991736; cluster_center=False;
ATCCTGGCGTCGAGCTATTTTTCCGCAGGACCTCTCCTACAGTATCGTCACCGCAGTAGA
GTTTAACCACCAAGTTCGGGATGGATTGGTGTGGTTCCTCTACGCCTAGGACACCAGAAT
A--
>RRNA5S_NC_023113_8 count=17; cluster_weight=35; cluster=RRNA5S_NC_023113_8; cluster_score=1.000000; cluster_center=True;
ATCCTGGCGTCGAGCTATTTTTCCGCAGGACCTCCCCTACAGTATCGTCACCGCAGTAGA
GTTTAACCACCAAGTTCGGGATGGATTGGTGTGGTTCCTCTACGCCTAGGACACCAGAAT
A--
>RRNA5S_NC_013707_215 count=1; cluster_weight=35; cluster=RRNA5S_NC_023113_8; cluster_score=0.991803; cluster_center=False;
ATCCTGGCGTCGAGCTATTTTTCCGCAGGACCTCCCCTACAGTATCGTCACCGCAGTAGA
GTTTAACCACCAAGTTCGGGATGGATTGGTGTGGTTCCTCTACGCCTAGGACACCAGAAT
AT-