Add scripts to generate reference DBs for LSC and SSC · 37e1ecc9fd - annotate - Gitea: Git with a cup of tea

PhyloSkims/annotate

Add scripts to generate reference DBs for LSC and SSC

Former-commit-id: 77fd69c9687bfc7cfd3305299c7c81d2a9eddada
Former-commit-id: 4d09933673c30d6a9b2b9cc985b33ef23d7a99f4

This commit is contained in:

Eric Coissac

2015-10-07 11:32:17 -03:00

parent fb1158bcd4

commit 37e1ecc9fd

8 changed files with 530 additions and 0 deletions

									
										8

detectors/normalize/tools/selectViridiplantae.sh
									
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				#!/bin/bash

				grep -A 1 '  ORGANISM' $* | \

				  grep -B 1 Viridiplantae | \

				  awk '{print $1}' | \

				  grep '\.gbk' | \

				  sed -E 's/(^.*\.gbk).$/\1/' | \

				  uniq