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cds go_test bug fixed

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Former-commit-id: f73133dca83d02a0c223e98a3ac82fdb0d03c5ae
Former-commit-id: 3db7c0037f7c109f4479490480d4323a55206c6a
This commit is contained in:
alain viari
2015-11-13 22:37:22 +01:00
parent 42707c281c
commit 405631f527
38 changed files with 231 additions and 37 deletions
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10
detectors/cds/params/default
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@@ -2,9 +2,11 @@
# CDS Searching parameters
#
Notify " using default exonerate parameters"
#
# general parameters
# (may be overriden by enviroment variables)
# may be overriden by enviroment variables (AssignUndef)
#
AssignUndef TMP_CLEANUP 1
@@ -30,11 +32,11 @@ AssignUndef PASS1_BESTN 10
AssignUndef PASS1_FRAMESHIFT -100
# pass1: exonerate use Blosum62 with larger penalty for Stops
AssignUndef PASS1_SUBMAT $MODELS_DIR/blosum62.mat
AssignUndef PASS1_SUBMAT $ModelsDir/blosum62.mat
# comment next lines to use default or specific splice model
# AssignUndef SPLICE3MODEL $MODELS_DIR/splice.none.frq
# AssignUndef SPLICE5MODEL $MODELS_DIR/splice.none.frq
# AssignUndef SPLICE3MODEL $ModelsDir/splice.none.frq
# AssignUndef SPLICE5MODEL $ModelsDir/splice.none.frq
#
# pass1: cluster selection parameters