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cds go_test bug fixed

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Former-commit-id: f73133dca83d02a0c223e98a3ac82fdb0d03c5ae
Former-commit-id: 3db7c0037f7c109f4479490480d4323a55206c6a
This commit is contained in:
alain viari
2015-11-13 22:37:22 +01:00
parent 42707c281c
commit 405631f527
38 changed files with 231 additions and 37 deletions
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18
detectors/cds/test/test.ref
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@@ -8,6 +8,7 @@ FT /gene="ccsA"
FT /locus_tag=""
FT /product="cytochrome c biogenesis protein"
FT /inference="similar to DNA sequence:AC_000188:LyesCp084"
FT /inference="detect pass:pass1:core"
FT /translation="MIFSTLEHILTHISFSIVSIVITIHLITFLVDEIVKLYDSSEKGI
FT IVTFFCITGLLVTRWVSSGHFPLSDLYESLIFLSWSFSLIHIIPYFKKNVLILSKITGP
FT SAILTQGFATSGILTEIHQSGILVPALQSEWLIMHVSMMILGYAALLCGSLLSVALLVI
@@ -24,6 +25,7 @@ FT /gene="ndhA_1"
FT /locus_tag=""
FT /product="NADH dehydrogenase subunit 1"
FT /inference="similar to DNA sequence:AC_000188:LyesCp085"
FT /inference="detect pass:pass1:core"
FT /translation="LSNSLSTVDIVEAQSKYGFWGWNLWRQPIGFIVFLISSLAECERL
FT PFDLPEAEEELVAGYQTEYSGIKFGLFYIASYLNLLVSSLFVTVLYLGGWNLSIPYIFV
FT PDIFGINKGGKVFGTLIGIFITLAKTYLFLFIPIATRWTLPRLRMDQLLNLGWKFLLPI
@@ -38,6 +40,7 @@ FT /gene="ndhA_2"
FT /locus_tag=""
FT /product="NADH dehydrogenase subunit 1"
FT /inference="similar to DNA sequence:AC_000188:LyesCp085"
FT /inference="detect pass:pass1:core"
FT /translation="MIIDTTEIETINSFSKLESLKEVYGIIWMLVPIVTLVLGITIGVL
FT VIVWLEREISAGIQQRIGPEYAGPLGILQALADGTKLLLKENLIPSTGDTRLFSIGPSI
FT AVISIFLSYSVIPFGDHLVLADLSIGVFFWIAISSIAPVGLLMSGYGSNNKYSFLGGLR
@@ -52,6 +55,7 @@ FT /gene="ndhB"
FT /locus_tag=""
FT /product="NADH dehydrogenase subunit 2"
FT /inference="similar to DNA sequence:AC_000188:LyesCp066"
FT /inference="detect pass:pass1:core"
FT /translation="MIWHVQNENFILDSTRIFMKAFHLLLFDGSLIFPECILIFGLILL
FT LMIDSTSDQKDIPWLYFISSTSLVMSITALLFRWREEPMISFSGNFQTNNFNEIFQFLI
FT LLCSTLCIPLSVEYIECTEMAITEFLLFVLTATLGGMFLCGANDLITIFVAPECFSLCS
@@ -79,6 +83,7 @@ FT /gene="ndhD"
FT /locus_tag=""
FT /product="NADH dehydrogenase subunit 4"
FT /inference="similar to DNA sequence:AC_000188:LyesCp081"
FT /inference="detect pass:pass1:core"
FT /translation="MNYFPWLTIIVVFPIFAGSLIFFLPHKGNRVIRWYTICICILELL
FT LTTYAFCYHFQSDDPLIQLVEDYKWIDFFDFHWRLGIDGLSIGPILLTGFITTLATLAA
FT WPVTRDSRLFHFLMLAMYSGQIGLFSSRDLLLFFIMWELELIPVYLLLAMWGGKKRLYS
@@ -98,6 +103,7 @@ FT /gene="ndhE"
FT /locus_tag=""
FT /product="NADH dehydrogenase subunit 4L"
FT /inference="similar to DNA sequence:AC_000188:LyesCp080"
FT /inference="detect pass:pass1:core"
FT /translation="MILEHVLVLSAYLFSIGIYGLITSRNMVRALMCLELILNAVNINF
FT VTFSDFFDNRQLKGDIFSIFVIAIAAAEAAIGLAIVSSIYRNRKSTRINQSNLLNN"
FT gene complement(11509..13722)
@@ -110,6 +116,7 @@ FT /gene="ndhF"
FT /locus_tag=""
FT /product="NADH dehydrogenase subunit 5"
FT /inference="similar to DNA sequence:AC_000188:LyesCp073"
FT /inference="detect pass:pass1:core"
FT /translation="MEQTYEYAWIIPFIPLPVPMLIGAGLILFPTATKRFRRMWAFQSV
FT LLLSIVMIFSIYLSIQQINSSSVYQYVWSWIINNDFSLDFGYLIDPLTSIMSILITTVG
FT IMVLIYSDNYMAHDQGYLRFFAYMSFFSTSMLGLVTSSNLIQIYIFWELVGLCSYLLIG
@@ -133,6 +140,7 @@ FT /gene="ndhG"
FT /locus_tag=""
FT /product="NADH dehydrogenase subunit 6"
FT /inference="similar to DNA sequence:AC_000188:LyesCp077"
FT /inference="detect pass:pass1:core"
FT /translation="MDLSEPIHDFLLVFLGSGLILGGLGVVLLPNPIYSAFSLGLVLVC
FT TSLFYILSNAYFVAAAQLLIYVGAINVLIIFAVMFMNGSEYYKDFHLWTVGDGITSMVC
FT ISLFISLITTISDTSWYGIIWTTRSNQIIEQDFLSNSQQIGIHLSTDFFLPFELISIIL
@@ -147,6 +155,7 @@ FT /gene="ndhH"
FT /locus_tag=""
FT /product="NADH dehydrogenase subunit 7"
FT /inference="similar to DNA sequence:AC_000188:LyesCp078"
FT /inference="detect pass:pass1:core"
FT /translation="MTAPTTRKDLMIVNMGPQHPSMHGVLRLIVTLDGEDVVDCEPILG
FT YLHRGMEKIAENRTIIQYLPYVTRWDYLATMFTEAITINGPEQLGNIQVPKRASYIRVI
FT MLELSRIASHLLWLGPFMADIGAQTPFFYIFRERELIYDLFEAATGMRMMHNYFRIGGV
@@ -164,6 +173,7 @@ FT /gene="ndhI"
FT /locus_tag=""
FT /product="NADH dehydrogenase subunit I"
FT /inference="similar to DNA sequence:AC_000188:LyesCp076"
FT /inference="detect pass:pass1:core"
FT /translation="MLPMITEFINYGQQTIRAARYIGQGFMITLSHANRLPVTIQYPYE
FT KLITSERFRGRIHFEFDKCIACEVCVRVCPIDLPVVDWKLETDIRKKRLLNYSIDFGIC
FT IFCGNCVEYCPTNCLSMTEEYELSTYDRHELNYNQIALGRLPMSVIDDYTIRTISNLPQ
@@ -178,6 +188,7 @@ FT /gene="psaC"
FT /locus_tag=""
FT /product="photosystem I subunit VII"
FT /inference="similar to DNA sequence:AC_000188:LyesCp065"
FT /inference="detect pass:pass1:core"
FT /translation="MSHSVKIYDTCIGCTQCVRACPTDVLEMIPWDGCKAKQIASAPRT
FT EDCVGCKRCESACPTDFLSVRVYLWHETTRSMGLAY"
FT gene 53817..55307
@@ -190,6 +201,7 @@ FT /gene="rpl2"
FT /locus_tag=""
FT /product="ribosomal protein L2"
FT /inference="similar to DNA sequence:AC_000188:LyesCp030"
FT /inference="detect pass:pass1:core"
FT /translation="MAIHLYKTSTPSTRNGTVDSQVKSNPRNNLIYGQRRCGKGRNARG
FT IITARHRGGGHKRLYRKIDFRRNEKDIYGRIVTIEYDPNRNAYICLIHYGDGEKRYILH
FT PRGAIIGDTIVSGTEVPIKMGNALPSTDMPLGTAIHNIEITLGKGGQLARAAGAVAKLI
@@ -213,6 +225,7 @@ FT /gene="rpl23"
FT /locus_tag=""
FT /product="ribosomal protein L23"
FT /inference="similar to DNA sequence:AC_000188:LyesCp026"
FT /inference="detect pass:pass1:core"
FT /translation="MDGIKYAVFTDKSIRLLGKNQYTSNVESGSTRTEIKHWVELFFGV
FT KVIAMNSHRLPGKSRRMGPIMGHTMHYRRMIITLQPGYSIPPLRKKRT"
FT gene 14505..14672
@@ -225,6 +238,7 @@ FT /gene="rpl32"
FT /locus_tag=""
FT /product="ribosomal protein L32"
FT /inference="similar to DNA sequence:AC_000188:LyesCp036"
FT /inference="detect pass:pass1:core"
FT /translation="MAVPKKRTSTSKKRIRKNIWKRKGYWVALKAFSLAKSLSTGNSKS
FT FFVRQTKINK"
FT gene complement(24633..24896)
@@ -237,6 +251,7 @@ FT /gene="rps15"
FT /locus_tag=""
FT /product="ribosomal protein S15"
FT /inference="similar to DNA sequence:AC_000188:LyesCp029"
FT /inference="detect pass:pass1:core"
FT /translation="MVKNSVISVISQEEKKGSVEFQVFNFTNKIRRLTSHLELHKKDYL
FT SQRGLKKILGKRQRLLAYLAKKNRVRYKELINRLDIRETKTR"
FT gene 42157..42624
@@ -249,6 +264,7 @@ FT /gene="rps7"
FT /locus_tag=""
FT /product="ribosomal protein S7"
FT /inference="similar to DNA sequence:AC_000188:LyesCp008"
FT /inference="detect pass:pass1:core"
FT /translation="MSRRGTAEKKTAKSDPIYRNRLVNMLVNRILKHGKKSLAYQIIYR
FT AVKKIQQKTETNPLSVLRQAIRGVTPDITVKARRVGGSTHQVPIEIGSTQGKALAIRWL
FT LAASRKRPGRNMAFKLSSELVDAAKGSGDAIRKKEETHRMAEANRAFAHFR"
@@ -262,6 +278,7 @@ FT /gene="ycf1"
FT /locus_tag=""
FT /product="hypothetical chloroplast RF1"
FT /inference="similar to DNA sequence:AC_000188:LyesCp019"
FT /inference="detect pass:pass1:core"
FT /translation="MIFQSFLLGNLVSLCMKIINSVVVVGLYYGFLTTFSIGPSYLFLL
FT RALVMEEGTEKKVSATTGFITGQLMMFISIYYAPLHLALGRPHTITVLALPYLLFHFFW
FT NNHKHFFDYGSTTRNSMRNLSIQCVFLNNLIFQLFNHFILPSSMLARLVNIYLFRCNNK
@@ -305,6 +322,7 @@ FT /gene="ycf2"
FT /locus_tag=""
FT /product="Ycf2"
FT /inference="similar to DNA sequence:AC_000188:LyesCp004"
FT /inference="detect pass:pass1:core"
FT /translation="MRGHQFKSWIFELREILREIKNSHHFLDSWTQFNSVGSFIHIFFH
FT QERFLKLFDPRIWSILLSRNSQGSPSNRYFTIKGVILFVVAVLIYRINNRNMVERKNLY
FT LIGLLPIPMNSIGPRNDTLEESVGSSNINRLIVSLLYLPKGKKISESCFLNPKESTWVL