add gitignore files

Former-commit-id: 955ee956322e30388eac7e5322113e0783513e45
Former-commit-id: 212c98038aeb0c99043ef70048bf205766b75610

ports/.gitignore

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+/i386-darwin/

src/aragorn/.gitignore

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+/aragorn
+/aragorn1.2.36.o

src/clustalo/argtable/.gitignore

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+/build.i386-darwin/

src/clustalo/clustalo/.gitignore

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+/build.i386-darwin/

src/exonerate/.gitignore

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+/build.i386-darwin/

src/exonerate/exonerate/.gitignore

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+/build.i386-darwin/

src/exonerate/gettext/.gitignore

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+/build.i386-darwin/

src/exonerate/glib2/.gitignore

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+/build.i386-darwin/

src/exonerate/libffi/.gitignore

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+/build.i386-darwin/

src/exonerate/pkg-config/.gitignore

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+/build.i386-darwin/

src/hmmer3/hmmer3/.gitignore

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+/build.i386-darwin/

src/ncbiblast/binaries/.gitignore

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+/bin.i386-darwin/

src/repseek/repseek-2014.09/.gitignore

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+/align_blast2like.o
+/align_di.o
+/align_matrix.o
+/align_seeds.o
+/families_2seqs.o
+/families.o
+/filter.o
+/filter2seq.o
+/help.o
+/KMRK_mask.o
+/KMRK_merge_seeds.o
+/KMRK_Seeds.o
+/KMRK.o
+/lmin.o
+/memory_align.o
+/memory.o
+/output.o
+/read_seeds.o
+/readfst.o
+/repseek
+/sequence.o
+/smin.o
+/sort.o

src/sequtils/lxpack/src/Abisrc/.gitignore

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+/libaabi.a
+/libaabi.o

src/sequtils/lxpack/src/Biosrc/.gitignore

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+/bioseq.o
+/libbio.a
+/string.o

src/sequtils/lxpack/src/Fastasrc/.gitignore

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+/libfasta.a
+/libfasta.o

src/sequtils/lxpack/src/Utilsrc/.gitignore

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+/util_codon_skew
+/util_codon_skew_corr
+/util_complinv
+/util_cut
+/util_skew
+/util_skew_chi_mono
+/util_skew_mono
+/util_skew_teta
+/util_tab_aa
+/util_tab_codon
+/util_tab_dinuc
+/util_tab_nuc
+/util_translate

src/sumaclust/sumaclust_v1.0.10/.gitignore

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+/mtcompare_sumaclust.o
+/sumaclust
+/sumaclust.o

src/sumaclust/sumaclust_v1.0.10/sumalibs/libfasta/.gitignore

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+/fasta_header_handler.o
+/fasta_header_parser.o
+/fasta_seq_writer.o
+/header_mem_handler.o
+/libfasta.a
+/sequence.o

src/sumaclust/sumaclust_v1.0.10/sumalibs/libfile/.gitignore

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+/fileHandling.o
+/libfile.a

src/sumaclust/sumaclust_v1.0.10/sumalibs/liblcs/.gitignore

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+/liblcs.a
+/sse_banded_LCS_alignment.o
+/upperband.o

src/sumaclust/sumaclust_v1.0.10/sumalibs/libutils/.gitignore

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+/debug.o
+/libutils.a
+/utilities.o

src/sumatra/sumatra-1.0.10/.gitignore

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+/mtcompare_sumatra.o
+/sumatra
+/sumatra.o