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First version of the scripts for building the CAU tRNA database

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Former-commit-id: 443a0446133850bb57211c27d2001241b03472bd
Former-commit-id: 8af464a0786f81dddf795f0cbda9ada9974808bf
This commit is contained in:
Eric Coissac
2015-10-10 19:12:02 -03:00
parent c402923d0f
commit 6015339839
11 changed files with 1531 additions and 1289 deletions
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18
data/trna/CAU_tRNA_DB.log Normal file
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2015-10-10 18:52:35 [OA INFO ] 63859 -- Selecting Viridiplantae genebank entries...
2015-10-10 18:52:44 [OA INFO ] 63859 -- --> 695 entries selected
2015-10-10 18:52:44 [OA INFO ] 63859 -- Done
2015-10-10 18:52:44 [OA INFO ] 63859 -- Extracting the CAU tRNA from the plants entries...
2015-10-10 19:03:07 [OA INFO ] 63859 -- Done
2015-10-10 19:03:07 [OA INFO ] 63859 -- Sorting the CAU tRNA...
2015-10-10 19:03:07 [OA INFO ] 63859 -- Extract and dereplicate trnI...
2015-10-10 19:03:07 [OA INFO ] 63859 -- Extract and dereplicate trnM...
2015-10-10 19:03:07 [OA INFO ] 63859 -- Extract and dereplicate trnfM...
2015-10-10 19:03:07 [OA INFO ] 63859 -- Done
2015-10-10 19:03:07 [OA INFO ] 63859 -- Cleaning the CAU tRNA...
2015-10-10 19:03:07 [OA INFO ] 63859 -- First pass...
2015-10-10 19:03:09 [OA INFO ] 63859 -- --> 420 trnCAU.good.ids sequences kept
2015-10-10 19:03:09 [OA INFO ] 63859 -- Second pass...
2015-10-10 19:03:11 [OA INFO ] 63859 -- --> 419 trnCAU.good.ids sequences kept
2015-10-10 19:03:11 [OA INFO ] 63859 -- Done
2015-10-10 19:03:11 [OA INFO ] 63859 -- Installing the CAU tRNA database...
2015-10-10 19:03:11 [OA INFO ] 63859 -- Done