Patch compilation of binaries

Former-commit-id: 688670c339643a282bdeabafafff3b451be83cb6
Former-commit-id: 60d3e42d2af73515fea50d9c97dc4eacda9c8abb

src/sumatra/sumatra-1.0.10/Makefile

@@ -0,0 +1,47 @@
+
+
+EXEC=sumatra
+
+SUMATRA_SRC= sumatra.c \
+			 mtcompare_sumatra.c
+			              
+SUMATRA_OBJ= $(patsubst %.c,%.o,$(SUMATRA_SRC))
+
+
+SRCS= $(SUMATRA_SRC)
+
+LIB= -lfasta -llcs -lfile -lutils -lz -lm -lpthread
+
+include ./global.mk
+
+all: $(EXEC) install
+
+
+########
+#
+# sumatra compilation
+#
+########
+
+# executable compilation and link
+
+sumatra: $(SUMATRA_OBJ) $(LIBFASTA) $(LIBLCS) $(LIBFILE) $(LIBUTILS)
+	$(CC) $(LIBFASTAPATH) $(LIBLCSPATH) $(LIBFILEPATH) $(LIBUTILSPATH) $(LDFLAGS) -o $@  $(SUMATRA_OBJ)  $(LIB)
+	
+########
+#
+# project management
+#
+########
+
+clean:
+	rm -f *.o	
+	rm -f *.P
+	rm -f $(EXEC)
+	$(MAKE) -C ./sumalibs/libfasta clean
+	$(MAKE) -C ./sumalibs/liblcs clean
+	$(MAKE) -C ./sumalibs/libfile clean
+	$(MAKE) -C ./sumalibs/libutils clean
+
+install:
+	cp $(EXEC) $(BINDIR)