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Switch to a swissprot based reference database for CDS annotation

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Former-commit-id: 3da31ce8a135394ecac041291134d61f11f06d8f
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Eric Coissac
2022-02-16 22:50:17 +01:00
parent 90b3ee9b04
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IAP34 IAP34 -- -- -- Translocase_of_chloroplast_34;_(EC:3.6.5.-;)
ORF27 ORF27 -- -- -- Uncharacterized_3.0_kDa_protein_in_psbT-psbN_intergenic_region;
ORF473 ORF473 -- -- -- Putative_protein_TIC_214_C-terminal_part
ORF51 ORF51 -- -- -- Uncharacterized_5.9_kDa_protein_in_rps16-psbA_intergenic_region;
accD accD -- -- -- Acetyl-CoA_carboxylase_carboxyltransferase_subunit_beta_(EC:2.1.3.15)
atpA atpA -- -- -- ATP_synthase_subunit_alpha,_chloroplastic_(EC:7.1.2.2)
atpB atpB -- -- -- ATP_synthase_subunit_beta,_chloroplastic_(EC:7.1.2.2)
atpE atpE -- -- -- ATP_synthase_epsilon_chain,_chloroplastic
atpF atpF -- -- -- ATP_synthase_subunit_b,_chloroplastic
atpH atpH -- -- -- F-ATPase_subunit_c
atpI atpI -- -- -- ATP_synthase_subunit_a,_chloroplastic
ccsA ccsA -- -- -- Cytochrome_c_biogenesis_protein_CcsA
cemA cemA -- -- -- Chloroplast_envelope_membrane_protein;
chlB chlB -- -- -- LI-POR_subunit_B_(EC:1.3.7.7)
chlI chlI -- -- -- Mg-chelatase_subunit_I-1;_(EC:6.6.1.1;)
chlL chlL -- -- -- LI-POR_subunit_L_(EC:1.3.7.7)
chlN chlN -- -- -- LI-POR_subunit_N_(EC:1.3.7.7)
clpP clpP -- -- -- Chloroplastic_ATP-dependent_Clp_protease_proteolytic_subunit_1_(EC:3.4.21.92)
cysA cysA -- -- -- Sulfate/thiosulfate_import_ATP-binding_protein_CysA_(EC:7.3.2.3)
cysT cysT -- -- -- Probable_sulfate_transport_system_permease_protein_cysT;
ftsI ftsI -- -- -- Peptidoglycan_D,D-transpeptidase_FtsI_homolog_(EC:3.4.16.4)
ftsW ftsW -- -- -- PG_polymerase_(EC:2.4.1.129)
infA infA -- -- -- Translation_initiation_factor_IF-1,_chloroplastic
matK matK -- -- -- Maturase_K
minD minD -- -- -- Putative_septum_site-determining_protein_MinD;
ndhA ndhA -- -- -- NDH_subunit_1_(EC:7.1.1.-)
ndhB ndhB -- -- -- NAD(P)H-quinone_oxidoreductase_subunit_2_B,_chloroplastic_(EC:7.1.1.-)
ndhC ndhC -- -- -- NAD(P)H-quinone_oxidoreductase_subunit_3,_chloroplastic_(EC:7.1.1.-)
ndhD ndhD -- -- -- NAD(P)H-quinone_oxidoreductase_chain_4,_chloroplastic_(EC:7.1.1.-)
ndhE ndhE -- -- -- NAD(P)H-quinone_oxidoreductase_subunit_4L,_chloroplastic_(EC:7.1.1.-)
ndhF ndhF -- -- -- NAD(P)H-quinone_oxidoreductase_subunit_5,_chloroplastic;_(EC:7.1.1.-;)
ndhG ndhG -- -- -- NAD(P)H-quinone_oxidoreductase_subunit_6,_chloroplastic;_(EC:7.1.1.-;)
ndhH ndhH -- -- -- NAD(P)H-quinone_oxidoreductase_subunit_H,_chloroplastic_(EC:7.1.1.-)
ndhI ndhI -- -- -- NDH_subunit_I_(EC:7.1.1.-)
ndhJ ndhJ -- -- -- NAD(P)H-quinone_oxidoreductase_subunit_J,_chloroplastic_(EC:7.1.1.-)
ndhK ndhK -- -- -- NAD(P)H-quinone_oxidoreductase_subunit_K,_chloroplastic_(EC:7.1.1.-)
odpB odpB -- -- -- Pyruvate_dehydrogenase_E1_component_subunit_beta;_(EC:1.2.4.1;)
orf134 orf134 -- -- -- Uncharacterized_protein_ycf68;
orf137 orf137 -- -- -- Uncharacterized_protein_ycf72;
orf173 orf173 -- -- -- Uncharacterized_protein_ycf73;
orf332 orf332 -- -- -- Putative_RNA_polymerase_subunit_alpha_2;_(EC:2.7.7.6;)
orf365 orf365 -- -- -- Putative_RNA_polymerase_subunit_alpha_3;_(EC:2.7.7.6;)
orf574 orf574 -- -- -- Putative_RNA_polymerase_subunit_alpha_1;_(EC:2.7.7.6;)
orf81 orf81 -- -- -- Uncharacterized_protein_ycf70;
orf85 orf85 -- -- -- Uncharacterized_protein_ycf76;
petA petA -- -- -- Cytochrome_f
petB petB -- -- -- Cytochrome_b6
petD petD -- -- -- Cytochrome_b6-f_complex_subunit_4
petG petG -- -- -- Cytochrome_b6-f_complex_subunit_5
petL petL -- -- -- Cytochrome_b6-f_complex_subunit_6
petN petN -- -- -- Cytochrome_b6-f_complex_subunit_8;
psaA psaA -- -- -- Photosystem_I_P700_chlorophyll_a_apoprotein_A1_(EC:1.97.1.12)
psaB psaB -- -- -- Photosystem_I_P700_chlorophyll_a_apoprotein_A2_(EC:1.97.1.12)
psaC psaC -- -- -- Photosystem_I_iron-sulfur_center_(EC:1.97.1.12)
psaI psaI -- -- -- Photosystem_I_reaction_center_subunit_VIII
psaJ psaJ -- -- -- Photosystem_I_reaction_center_subunit_IX;
psaM psaM -- -- -- Photosystem_I_reaction_center_subunit_XII
psbA psbA -- -- -- PSII_D1_protein_(EC:1.10.3.9)
psbB psbB -- -- -- Photosystem_II_CP47_reaction_center_protein
psbC psbC -- -- -- Photosystem_II_CP43_reaction_center_protein
psbD psbD -- -- -- PSII_D2_protein_(EC:1.10.3.9)
psbE psbE -- -- -- Cytochrome_b559_subunit_alpha
psbF psbF -- -- -- Cytochrome_b559_subunit_beta
psbH psbH -- -- -- Photosystem_II_reaction_center_protein_H
psbI psbI -- -- -- Photosystem_II_reaction_center_protein_I
psbJ psbJ -- -- -- Photosystem_II_reaction_center_protein_J
psbK psbK -- -- -- Photosystem_II_reaction_center_protein_K
psbL psbL -- -- -- Photosystem_II_reaction_center_protein_L
psbM psbM -- -- -- Photosystem_II_reaction_center_protein_M
psbN psbN -- -- -- Protein_PsbN
psbT psbT -- -- -- Photosystem_II_reaction_center_protein_T
psbZ psbZ -- -- -- Photosystem_II_reaction_center_protein_Z
rbcL rbcL -- -- -- RuBisCO_large_subunit_(EC:4.1.1.39)
rbcR rbcR -- -- -- Probable_RuBisCO_transcriptional_regulator;
rpl12 rpl12 -- -- -- 50S_ribosomal_protein_L12,_chloroplastic
rpl14 rpl14 -- -- -- 50S_ribosomal_protein_L14,_chloroplastic
rpl16 rpl16 -- -- -- 50S_ribosomal_protein_L16,_chloroplastic
rpl19 rpl19 -- -- -- 50S_ribosomal_protein_L19,_chloroplastic
rpl2 rpl2 -- -- -- 50S_ribosomal_protein_L2-A,_chloroplastic;
rpl20 rpl20 -- -- -- 50S_ribosomal_protein_L20,_chloroplastic
rpl21 rpl21 -- -- -- 50S_ribosomal_protein_L21,_chloroplastic
rpl22 rpl22 -- -- -- 50S_ribosomal_protein_L22,_chloroplastic;
rpl23 rpl23 -- -- -- 50S_ribosomal_protein_L23-A,_chloroplastic;
rpl32 rpl32 -- -- -- 50S_ribosomal_protein_L32,_chloroplastic
rpl33 rpl33 -- -- -- 50S_ribosomal_protein_L33,_chloroplastic
rpl36 rpl36 -- -- -- 50S_ribosomal_protein_L36,_chloroplastic
rpl5 rpl5 -- -- -- 50S_ribosomal_protein_L5,_chloroplastic;
rpoA rpoA -- -- -- RNA_polymerase_subunit_alpha_(EC:2.7.7.6)
rpoB rpoB -- -- -- RNA_polymerase_subunit_beta_(EC:2.7.7.6)
rpoC1 rpoC1 -- -- -- RNA_polymerase_subunit_beta'_(EC:2.7.7.6)
rpoC2 rpoC2 -- -- -- RNA_polymerase_subunit_beta''_(EC:2.7.7.6)
rps11 rps11 -- -- -- 30S_ribosomal_protein_S11,_chloroplastic
rps12 rps12 -- -- -- 30S_ribosomal_protein_S12-B,_chloroplastic;
rps14 rps14 -- -- -- 30S_ribosomal_protein_S14,_chloroplastic
rps15 rps15 -- -- -- 30S_ribosomal_protein_S15,_chloroplastic;
rps16 rps16 -- -- -- 30S_ribosomal_protein_S16,_chloroplastic
rps18 rps18 -- -- -- Chloroplast_30S_ribosomal_protein_S18;
rps19 rps19 -- -- -- 30S_ribosomal_protein_S19,_chloroplastic
rps2 rps2 -- -- -- 30S_ribosomal_protein_S2,_chloroplastic;
rps3 rps3 -- -- -- 30S_ribosomal_protein_S3,_chloroplastic;
rps4 rps4 -- -- -- 30S_ribosomal_protein_S4,_chloroplastic;
rps7 rps7 -- -- -- 30S_ribosomal_protein_S7,_chloroplastic;
rps8 rps8 -- -- -- 30S_ribosomal_protein_S8,_chloroplastic;
rps9 rps9 -- -- -- 30S_ribosomal_protein_S9,_chloroplastic;
toc64 toc64 -- -- -- Translocon_at_the_outer_membrane_of_chloroplasts_64;
tufA tufA -- -- -- Elongation_factor_Tu,_chloroplastic;
ycf1 ycf1 -- -- -- Protein_TIC_214
ycf12 ycf12 -- -- -- Photosystem_II_reaction_center_protein_Ycf12
ycf15 ycf15 -- -- -- Putative_uncharacterized_protein_ycf15;
ycf2 ycf2 -- -- -- Protein_Ycf2_A;
ycf20 ycf20 -- -- -- Uncharacterized_protein_ycf20;
ycf3 ycf3 -- -- -- Photosystem_I_assembly_protein_Ycf3
ycf4 ycf4 -- -- -- Photosystem_I_assembly_protein_Ycf4
ycf61 ycf61 -- -- -- RNA_polymerase_omega_subunit;_(EC:2.7.7.6;)
ycf62 ycf62 -- -- -- tRNA(Ile)-lysidine_synthase,_chloroplastic_(EC:6.3.4.19)
ycf65 ycf65 -- -- -- Probable_30S_ribosomal_protein_3,_chloroplastic;
ycf66 ycf66 -- -- -- Uncharacterized_protein_ycf66;
ycf81 ycf81 -- -- -- Uncharacterized_protein_ycf81;