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Switch to a swissprot based reference database for CDS annotation

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Former-commit-id: 3da31ce8a135394ecac041291134d61f11f06d8f
Former-commit-id: 406f41a7cb2db14ea832480b86f72a11d3b0ab4a
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Eric Coissac
2022-02-16 22:50:17 +01:00
parent 90b3ee9b04
commit 831669433e
644 changed files with 25433 additions and 485597 deletions
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data/cds/sp_chlorodb/shell/cysA.fst Normal file
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>CYSA_ANTAG SP_AC=Q85A69; EMBL_AC=BAC55436.1; gene=cysA;
MSILVYEVSKSLGNLKVLDRVSLYVRKVSLVALLGPSGSGKSSLLRIIAGLDSPDYGSVW
LHGTDMTNTSTQYRHMAFVFQHYALFKNMTVYENISFGLRLRGFSYQKIRNKVNDLLDCL
RISDIVSEYPGKLSGGQKQRVALARSLAIKSDFLLLDEPFGALDGELRRHLSKWLKRYLK
DNGITTIMVTHDQKEAISMADEIVVLKQGRFLQQGRSKNLYDEPIDYFVGIFSGSFIEFP
QLEESLDAPLGSSSSSSSSTKKSMEKDFTPFIPDLIWSQIFTNQSIHHYHFFLRPHELYL
ESQIDLKAIPVQIKKIIYKRTFVQLDLSITPSSWNITIPIGYQAFRKLNIQSFVQKLYIK
PRNQVYLRAYPKKKNIISKQI
>CYSA_MARPO SP_AC=P10091; EMBL_AC=CAA28079.1; gene=cysA;
MSILIYKVSKSLGNLKILDRVSLYVPKFSLIALLGPSGSGKSSLLRIIAGLDNCDYGNIW
LHGIDVTNISTQYRRMSFVFQHYALFKHMTVYENISFGLRLRGFSAQKITNKVNDLLNCL
RIADISFEYPAQLSGGQKQRVALARSLAIQPDFLLLDEPFGALDGELRRHLSKWLKRYLQ
DNKITTIMVTHDQKEAISMADEIVILKEGRLLQQGKPKNLYDQPINFFVGIFLGLLIEIP
KLNESITLKNIPSKTPQNLKKFAFDPIWVKIFANRSINKYRFFLRPYEFCIKSEMDLEAT
PVQIKTIIYKRTFVQLDLFVTSFLWNLTIPIGYQSFRNLHIESFMQTLYIKPRLQVFLRA
YPILTNIKKN
>CYSA_MESVI SP_AC=Q9MUN1; EMBL_AC=AAF43869.1; gene=cysA;
MSILIDNISKKFGNFQALNHINLEIKSGSIIALLGPSGSGKSTLLRIIAGLDTPDEGTIW
ISGKNASGYSIQSRNIGFVFQNYALFKNMTVYDNIAFGLELRRISFNDISRKVNKLLELV
QLQNLGHRYPAQLSGGQRQRIALARALAIEPKVLLLDEPFGALDARVRKNLRAWLRDLHN
KFSITTIIVTHDQQEAMEIADEIVVFNSGRIEQIGKPQDIYDQPATPFVFSLLGYVNKIS
FDNEIANFLLSSFPEKQSVLMQEKQFYIRPHQIVISKQSNESNYSAKIENLLYIGNWIHL
DIYVASFNVNLKVHVSPKEFDNLQLKSFQENIYVSLRSKGKEPIRFLE