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Switch to a swissprot based reference database for CDS annotation

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Former-commit-id: 3da31ce8a135394ecac041291134d61f11f06d8f
Former-commit-id: 406f41a7cb2db14ea832480b86f72a11d3b0ab4a
This commit is contained in:
Eric Coissac
2022-02-16 22:50:17 +01:00
parent 90b3ee9b04
commit 831669433e
644 changed files with 25433 additions and 485597 deletions
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data/cds/sp_chlorodb/shell/cysT.fst Normal file
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>CYST_ANTAG SP_AC=Q85AI0; EMBL_AC=BAC55499.1; gene=cysT;
MSQLIFIPLLISLLVTKGKIRFLNNFESVLALSLHYGILVLALPIFILLYKAKKQPCSIL
LKVTTEPIILSAYATTFSTAFLAITINALFGLIIAWILVKYEFTGKETLDAIVDLPFALP
ASVGGLTLMTVYSDRGWMGPICSGLGLKIVFSRLGVPMATIFVSLPFVVRTIQPVLQDVE
EELEEAAWCIGASPWTTFCQISLPLLTPSLLTGTALGFSRAIGEYGSIVLIACNIPMKDL
VISVLIFQKLEQYDYQGAIVVATIVLIASFGGLLIINKVQLWKQNLSK
>CYST_CHLAT SP_AC=A2CI71; EMBL_AC=ABM87953.1; gene=cysT;
MSTNEMNQKKRLNRSGSLSSHLTRSWPWQLTLSYLFFMLILPVIALLSRASDELFKDFWQ
IAAEPVAISTYVVTLMTALFATLINGFFGVIIAWVLVRYNFPGKRIIDAAIDLPFALPTS
VAGLTLATVYSDQGWIGHLFESIGIKVAFTRVGVAVAMIFVSFPFVVRTLQPVLVEIDQE
LEEAAWSLGASTWRTFWRVIFPPLTPAIVTGVALAFSRAIGEYGSVVIVASNIPFKDLTA
PVLIFQRLEQYDYTGATIIGTVILSISLFLLFGINFIQSLNQLYVK
>CYST_MESVI SP_AC=Q9MUL9; EMBL_AC=AAF43879.1; gene=cysT;
MNYFSKLSCSWRITLGYLLFMLILPILALLSRASQELFSNFWSIAMEPAAIYAYSITLSM
ALIASIVNGIFGIFIAWILVRYNFPGKRIVDAAIDLPFALPTSVAGLTLATVYSEKGWIG
HFLQSLSIKVVFTKLGVGVAMIFVSFPFVVRTLQPVLQDIEKELEEAAWSLGASSWTTFW
KVIFPSLIPSLLTGIALAFSRAVGEYGSVVIIASNIPFKDLTAPVLIFQKLEQYDYTGAT
VIGTVILSISLFILVGINIIQSLNQMYSK
>CYST_ZYGCR SP_AC=Q32RF7; EMBL_AC=AAX45809.1; gene=cysT;
MILLCVISRTVLLNIRKRDIRFFTYFEFLLIAALHYGILILFLPVTALLLRTKEQSWYTI
FQAVTEPVVLSAYKVTFLTAALAAVINAFLGLILAWILVRYRFPGKNFLDAAVDLPFALP
TSVGGLTLMTVYSDKGWMGPICSWLGIKIAFSRLGVLIAMMFVSLPFIVRTIQPVLQSME
EETEEAAWCIGASPWTTFWNVLFPPMISPLLTGTALGFSRAIGEYGSIVLVASNIPMKDL
VVSVLIFQRLEQYDYKGATAIASVVLLVSFAILLIINYIYLKRKSLTR