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Switch to a swissprot based reference database for CDS annotation

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Former-commit-id: 3da31ce8a135394ecac041291134d61f11f06d8f
Former-commit-id: 406f41a7cb2db14ea832480b86f72a11d3b0ab4a
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Eric Coissac
2022-02-16 22:50:17 +01:00
parent 90b3ee9b04
commit 831669433e
644 changed files with 25433 additions and 485597 deletions
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data/cds/sp_chlorodb/shell/odpB.fst Normal file
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>ODPB_CHAGL SP_AC=Q8MA03; EMBL_AC=AAM96525.1; gene=odpB;
MAEVLLFEALRDALDEEMQRDPSVLVMGEDVGHYGGSYKVTKGFHEKYGDLRLLDTPIAE
NSFTGMAIGAAMTGLRPIVEGMNMGFLLLAFNQIANNAGMLHYTSGGNFKIPIVIRGPGG
VGRQLGAEHSQRLESYFQSVPGLQMVACSTPYNGKGLLKSAIRNDNPVIFFEHVLLYNLN
ENLIEQEYLLCLEKAEVVRPGNDITILTYSRMRHHVLQAAKVLVNKGYDPEIIDILSLKP
LDMGTISLSVRKTHKVLIVEECMRTGGIGASLRAAILEDLFDYLDAPIQCLSSQDVPTPY
SGPLEELTVIQPNQIIQAVEEMCKIE
>ODPB_CHAVU SP_AC=Q1ACL0; EMBL_AC=ABA61922.1; gene=odpB;
MSEKLLYEALNEGIHEEIERDPKVFVIGEDIGHYGGSYKVTKGLFEKYGNLRILDTPIAE
NSFTGIAIGAAMTGLRPIIEGMNMGFLLLAFNQIANNAGMLHYTSGGNFTTPLVVRGPGG
VGRQLGAEHSQRLESYFQSVPGLQMVACSTPYNAKGLIKSAIRSQNPIIFFEHVLLYNIK
ENIPQKEYLVPLEKAELVRSGNQITILTYSRMRYHVLQAAKTLIEKGYDPEIIDIISLKP
LDMGTISTSLRKTHKVLIVEECMKTGGIGTTLKSAILESLFDFLDTPIMSLSSQDVPTPY
NGFLEDLTVIQPSQIVEAAEKIILYS
>ODPB_CHLAT SP_AC=A2CI50; EMBL_AC=ABM87959.1; gene=odpB;
MAVRFLFEALQKAIDEEMEREKRVVLIGEDIGHYGGSYKVTQGLYGKYGKHRVIDTPIAE
YSFVGAAVGAAATGLIPVVEGMNMAFILLAYSQISNNMGMLCATSGGHFQVPMVLRGPGG
IGKQLGAEHSQRLESYFQSVPGLQIVTCSTPYNAKGLLKSAIRSKNPILFIEHVLLYNLK
GEVPDNDYLLPLEKAELVREGSDITVLTYSRQRYNVIQAVKVLVEEGYDPEVIDLISLKP
FDMETIGKSIQKTHKVLIVEECMMTGGISNVLQSLIIDNFFDALDAAPLILSSPNVPTPY
TGPLEEATVVQTIDIIESIEYGITGKPPKPRTAKK
>ODPB_MESVI SP_AC=Q9MUR4; EMBL_AC=AAF43837.1; gene=odpB;
MTVRFLFEALNMAIDEEMARNDKVALLGEDIGHYGGSYKVTQNLYAKYGEHRVIDTPIAE
NSFVGAAIGAAMTGLVTVVEGMNMGFILLAFSQISNNMGMLSATSGGHYHIPIVLRGPGG
VGKQLGAEHSQRLECYFQSVPGLQIVACSTPYNAKGLLKSAIRSKNPIFFLEHVLLYNLK
AEVPDNDYVLPLEKAEIVRQGNDITILTYSRMRYNVIQAVKVLVEKGYDPEIIDLISLKP
FDIETIGKSIQKTHKVLIVEESMMTGGISNVLQSLILENFFDDLDNRPMCLSSPNVPTPY
SGPLEEVSIVQTADIIESVEQILTNKM
>ODPB_STAPU SP_AC=Q32RS0; EMBL_AC=AAX45708.1; gene=odpB;
MSEMLLFEALREGLQEEMDRDPKVLVMGEDVGHYGGSYKVTKGFAEKYGDLRLLDTPIAE
NSFTGMAIGAAMTGLRPVVEGMNMGFLLLAFNQIANNAGMLHYTSGANFTIPIVIRGPGG
VGRQLGAEHSQRLESYFQSVPGLQLVACSTPINAKGLIKSSIRSENPVILFEHVLLYNLK
ETIPDNEYLVCLEKAEIVRPGTDITILTYSRMRHHVLQATKSLVYKGYDPEIIDIVSLKP
VDLGTISTSIKKTHKVLIVEECMRTGGIGASLRATIMEHLFDFLDAPIMCLSSQDVPTPY
SGPLEELTVIQPAQIVQAVEQLCNNGNN
>ODPB_ZYGCR SP_AC=Q32RM2; EMBL_AC=AAX45823.1; gene=odpB;
MAEVLLFEALRQGLQEEMDRDPRVMVMGEDVGHYGGSYKVTKGFAERYGDLRLLDTPIAE
NSFTGMAIGAAMTGLRPVVEGMNMGFLLLAFNQIANNAGMLHYTSGGNFTIPIVIRGPGG
VGRQLGAEHSQRLESYFQSVPGLQMVACSTPYNAKGLIKSAIRSDNPIILFEHVLLYNLK
EDLAEEEYLVCLEKAEVVRPGNDITILTYSRMRHNVLQATKSLVYKGYDPEIIDIVSLKP
FDLGTIGASVCKTHKVLIVEECMRTGGIGATLRAAIMEHFFDYLDAPILCLSSQDVPTPY
SSPLEELTVIQPNQIIQVVEQLCEN