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Switch to a swissprot based reference database for CDS annotation

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Former-commit-id: 3da31ce8a135394ecac041291134d61f11f06d8f
Former-commit-id: 406f41a7cb2db14ea832480b86f72a11d3b0ab4a
This commit is contained in:
Eric Coissac
2022-02-16 22:50:17 +01:00
parent 90b3ee9b04
commit 831669433e
644 changed files with 25433 additions and 485597 deletions
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25
data/cds/sp_chlorodb/shell/rpl5.fst Normal file
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>RK5_CHAGL SP_AC=Q8M9V3; EMBL_AC=AAM96564.1; gene=rpl5;
MVQRLKSIYLNNVIPKLNEEAKYKNVHQIPRLKKIVINCGIGEASQNAKTLEYTIRDLSI
IAGQRPLVKRAKKAIASFQLRKKMPVGVSVTLRGDAMYAFLDRLINLALPRIRDFQGLNR
KSFDGHGNFHLGLKEQLMFPEIDYDKIDKLRGMDICIVTTCTNDNECFQFLSALGMPFQT
VSSKKL
>RK5_CHAVU SP_AC=Q1ACG2; EMBL_AC=ABA61982.1; gene=rpl5;
MIQRLKKFYLDNVVPDLYQKFEYTNIHQLPYLKKIVINCGFGEASQNSKFLEGTIKDLSI
IASQKPIVTRARKAIAGFQIRKKMPVGVCVTLRGETMYAFLDRLIHLALPRIKDFQGLNW
KSFDGYGNFHFGIREQLIFPEIHYDKIDKIRGMNISIITSCHTDTEALHFLTSLGIPFDS
RDSFSTQER
>RK5_CHLAT SP_AC=A2CI45; EMBL_AC=ABM87964.1; gene=rpl5;
MVQRLKAIYLEKAAPRLREMFEYKNVHQIPRIEKIIINCGLGEASQNAKSLDSAMKELSI
IAGQKGVITRAKKAIANFKLRKDMPVGISITLRGNSMYAFLDRLINLALPRIKDFQGVSS
KGFDGHGNYNLGLKEQLMFPEINFDQIDQIRGMDISIVTTCNTDSEGFYLLETLGMPFKE
KFTKN
>RK5_MESVI SP_AC=Q9MUU5; EMBL_AC=AAF43806.1; gene=rpl5;
MVQRLKTLYLESAVLKLQETFGYKNPHQIPRIKKIVINCGLSEASQNSKSLESAMKELSI
IAGQKGVITRAKKAIAGFKIREGLPIGICITLRGDSMYAFLDRLINLALPRIRDFQGVSS
KSFDGHGNYNLGLKEQLMFPEIDYDQIDKIRGMDICIVTNAKTDSEGFYLLEVLGMPFKE
KFAN
>RK5_ZYGCR SP_AC=Q32RN3; EMBL_AC=AAX45860.1; gene=rpl5;
MTQRLKTFYLNTVVPKLRKQLEYQNIHQVPQVTKIVINCGLGEASQNAKSLESTLRDLSF
ITGQKPIVTRAKKSIAGFQIRAQMSVGVCVTLRADAMYAFLDRLIHLALPRIRDFQGLNS
NSFDGHGNFHLGLKEQLMFPEIDYDKIEKLRGMDICIVTSSQNNKEALQLLVALGMPFQT
TLTA