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Switch to a swissprot based reference database for CDS annotation

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Former-commit-id: 3da31ce8a135394ecac041291134d61f11f06d8f
Former-commit-id: 406f41a7cb2db14ea832480b86f72a11d3b0ab4a
This commit is contained in:
Eric Coissac
2022-02-16 22:50:17 +01:00
parent 90b3ee9b04
commit 831669433e
644 changed files with 25433 additions and 485597 deletions
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data/cds/sp_chlorodb/shell/tufA.fst Normal file
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>EFTU_CHAGL SP_AC=Q8M9W7; EMBL_AC=AAM96580.1; gene=tufA;
MNIFRDKKTHINIATIGHFNHGKTTLSAAIAMTLANKKYRLDKKSIKVTLEEKNQGIGIY
THHFQYETTLRHYSHTDCPGHTDYINNMIAGISQVDSTILVVSAVDGSMSQTKEHLLIAK
LLGISSFIVFINKEDQLDDDKFVYLVQKEISQFLMSHGFQTNKIPIVSGSALLALETLIQ
QPNVLRGENYWVDKIYTLIELLDSYIPKPKRKKDKHFLMWIDSVKFLPNIGPIAMGRIEQ
GTIKVGEFIDIVGFRETRTAKIISLEFFNQSCMQVLAGDDIGVSIEGTKNHNDIKKGMII
STPGTIKSWLEFEAQVYILKREEGGRTSPFFKGYCPQFFFKTTCVTGRIEAIEYTTGSKT
WMIMPGDKLKIQVNLVYPIGIKKRMRFLIREGGVLVGVGIISNLIK
>EFTU_CHAVU SP_AC=Q1ACI3; EMBL_AC=ABA61966.1; gene=tufA;
MAQEVFQRTKPHVNIGTIGHVDHGKTTLTAAITMTLAVNSTCTPKKYDEIDAAPEERARG
ITINTAHVEYETASRHYAHVDCPGHADYIKNMITGAAQMDGAILVVSAADGPMPQTKEHI
LLAKQVGVPSIVVFLNKEDQVDDEEILQLVDLEVRESLINYEFPGDKVPVVAGSALMALQ
ALTEKPNTLRGENKWVDKIYELMDAVDSYIPTPKRDIEKPFLMPIEDVFSIQGRGTVATG
RIERGILKLGDIVELIGLNEKIRSTVVTGLEMFRRLLEQGFAGENIGVLLRGIEKKDIER
GMVIAQPGTIEPHTRFEAQVYILRKEEGGRHSPFFAGYRPQFFVRTADVTGVIEAFEYDN
GDKTRMVMPGDRVKMIVNLICPIAIEKKMRFAIREGGRTIGAGVVLQILDSTQLKSKNK
>EFTU_CHLAT SP_AC=A2CI56; EMBL_AC=ABM87969.1; gene=tufA;
MAREKFERKKPHVNIGTIGHVDHGKTTLTAAITMALAASTGAKGKRYDEIDAAPEERARG
ITINTAHVEYETEKRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSGADGPMPQTKEHI
LLAKQVGVPNVVVFLNKEDQVDDAELLELVELEVRETLSDYDFPGDEVPVVAGSALLALE
SLTQNPKIVKGENKWVDKIYSLMDQVDAYIPTPERDTDKPFLMAVEDVFSITGRGTVATG
RVERGTVKVGEAIEIVGLREAPVTSIVTGLEMFQKTLEESVAGDNVGILLRGIQKKDIER
GMVLAKPGTIKPHKSFEAQVYILNKEEGGRHTPFFQGYRPQFYVRTTDVTGKIESFQADD
GSETQMVMPGDRIKMVVQLIQPIAIEKGMRFAIREGGRTVGAGVVFNILE
>EFTU_MESVI SP_AC=Q9MUP0; EMBL_AC=AAF43860.1; gene=tufA;
MAREKFERKKPHINIGTIGHVDHGKTTLTAAITMALAVGTGKSGKRYDEIDAAPEEKARG
ITINTAHVEYETETRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSGADGPMPQTKEHI
LLAKQVGVPNMVVFLNKEDQVDDPELLELVELEVRETLNSYDFPGDEIPVVAGSALMALE
ALTQDSKLARGSNPWVDKIYALMDQVDKYIPTPQRDTDKPFLMAIEDVFSITGRGTVATG
RVERGKVVVGENVDIVGLANIPQNTTVTGLEMFQKTLEESVAGDNVGVLLRGIQKDQVER
GMVLAKPNTIKPHIRFESEVYVLAKEEGGRHTPFFPGYRPQFYVRTTDVTGKIDSFKADD
GSDTQMVMPGDRVKMVVSLIQPIAIEKGMRFAIREGGRTVGAGIVSEILE