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Switch to a swissprot based reference database for CDS annotation

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Former-commit-id: 3da31ce8a135394ecac041291134d61f11f06d8f
Former-commit-id: 406f41a7cb2db14ea832480b86f72a11d3b0ab4a
This commit is contained in:
Eric Coissac
2022-02-16 22:50:17 +01:00
parent 90b3ee9b04
commit 831669433e
644 changed files with 25433 additions and 485597 deletions
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39
data/cds/sp_chlorodb/shell/ycf62.fst Normal file
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>TILS_CHAGL SP_AC=Q8M9Y1; EMBL_AC=AAM96585.1; gene=ycf62;
MNHFNLKLIKRIQNDLIKYNLLKPKKSILIAISGGQDSIVLLKILSILQIQWKWKLSIIY
CDHQWNIYSKNQAFHLYKVSFQMGIPFYHGVTIKPLRTEKSARIWRYSVFQRIASISKFN
VIVTAHSSTDRVETFLYNLFRGTGVQGLQSLTWKKNIQFEILPNFARSKKSFDLKILSLE
SKNGIQTYSDYNKLQLIRPLLNITRTELGKFCSNENLPLWPDLTNYNLSIIRNRIRYQTM
PYLKIYFNCNLEKILAQIAEILYSENLYFENLSKKIMLKISFEEINSKKLSLSLFKILPL
ALQRRIIKFFFENHFSKILDFRDIEEIRYYILNLSNNSKFL
>TILS_CHAVU SP_AC=Q1ACK8; EMBL_AC=ABA61895.1; gene=ycf62;
MYNFINLIDRIDHILVERKLLLSKQKILIAVSGGQDSIFLLNLLLQLRFHWEWEIGIVNC
DHMWNQFSQTASLYVSQLACQMNLNYYQCISPSFYRKEEKARSWRYKLFQRIAYLHDYTI
IITAHTASDRVETLFYNLFKGSGLHGLHSLTWKRQIYKKRIHLVRPLLSTTRGELSQIFK
QIQIPLYLDSTNLNVKIYRNRIRYQLLPYLRLFFNRNLDRSIAQFAEILHSESLFLETLT
QILRNKIEIINKNQKILDIQFIRVIPFAIQRRIIKQFLEHQSIYSFDFCHIEKIRIISNI
IIYKSDIYLPGGNRLTISKKYILLCSKISF
>TILS_MESVI SP_AC=Q9MUR3; EMBL_AC=AAF43838.1; gene=ycf62;
MIFLYSKIHKDIIIHNLLKKNDRILIAASGGQDSISLIKILVELQPQWNWDLGIVNCDHS
WNQSSRKGSSQIAQIAQLLNIDFYQIVTCHQLINEEKAREWRYQKIEDIAFSNKYNVIVT
AHNASDRIETFFFNLLRGTSITGVQSLLWTRSLSSGINIVRPLLNTTRFELKNFVKEIHL
PLWPDTSNQSLFFKRNRIRKQLLPYLRKYFNPKVDKVIAQFAEIIHDESFYMENVTQIIE
KQLFFGSKNIQQEFIENLPIAIERRIIKKMIEKKLSENHCNFLNIEQIRFFFQKNRKKYS
LLECIHFFSN
>TILS_STAPU SP_AC=Q32RX0; EMBL_AC=AAX45766.1; gene=ycf62;
MQNNKDNYLKFTKMDKKSIRAPYDQNDLSKKIQRIKKREDIFLLYKINNIITEHTLLQPK
QRILIAVSGGQDSICLLRILFDLQRKWSWKLGIIHCDHRWNSRSKIQAEHVACLAINLQI
NYHEGIAIESVQKESIARLWRYNVIQSVAISNNYTAIITGHNASDRIETLLYNLMRGSGL
HGLQSIKWKRNLCFSHFTRSVLSKIKFSFLVKKLKFIKTFMDHEDFQGNHFFFLKKRKQL
HLIRPFLETTRTEIRNILTIWNFPSWPDVSNKELRIRRNRIRHRVIPYIRIHYNPNIDQT
LVRWAEIVQSETFYLEQLTNYILFKIEIKKKISSISLKIPLEQLRKQKEPSEEKLNFYQS
AIPVDLLRSLPVAIQRRVLKQYIYINTNRILGFQYIEQIRLSCLFSLQDSLRKFLHRHRC
RPIYLSEHISTHSMKSSTSDTCIDWKGPKEKKKLVTPWLIFPGGIKFLIRKNYLFIFSPK
NSSLTIKRPRIEQ
>TILS_ZYGCR SP_AC=Q32RJ9; EMBL_AC=AAX45881.1; gene=ycf62;
MLTNPIFYLTNSNTSKASTHSNTNSKSLFNTKREDLQILYKLNQLLIEKSILHPYQRILI
AVSGGQDSICLLNILNKLRSTWHWKLGIVHCDHKWYLDSALQAIHVSRLAANMQIDLYQA
LTTQSVNNEQLARNWRYELIRHVAICHNFSVIVTGHTASDRVETLIYNLIRGSGISGLQS
ISWKRKLNSMLTIRMRSVEEQIILYSKHVKCYQNRENLLEDKKNVDIYLIRPLLNVSRME
LKHLVQNWKLSIWSDCSNQNISICRNRIRHQLLPYLRQYFHPKIDYVLNSCTEVMYTETL
YLDSIARYVLSKALSFISMPLNDQTCVKLDFELLRAVPLAIQRRILKYFLDVITHTSVSF
KHVEQVRIACLITTNSSNQFAKDSMNFTDQLLINRSIYLPGKKILQVINARFLIICNNIT