Patch a bug to launch exonerate on complexe filename

Former-commit-id: e8357a639a22cb123985a0ed487dfd4018c9bb0a
Former-commit-id: a2e1c2ce75c0eac9574b7a68506f6f209e54ea89

detectors/cds/bin/go_cds.csh

@@ -63,6 +63,8 @@ foreach dir ("core" "shell" "dust")
   endif
 end
 
+cp $temp/ $Genome.cds.fasta $Genome.cds.fasta 
+
 #
 # pass2: transsplicing
 #
@@ -71,6 +73,8 @@ end
 # pass3: prokov
 #
 
+$PROG_DIR/do_prokov.sh $Fasta $Genome.cds.fasta $temp
+
 #
 # end : output on stdout
 #